View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4097_high_5 (Length: 508)
Name: NF4097_high_5
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4097_high_5 |
 | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Original strand, 2468192 - 2468682
Alignment:
| Q |
1 |
aaggcttgtgttttcttaaacataataaattccttcatttataagatttggaataagtctaatgcagaaagaatcattgtcttgaatgtttgaccatttc |
100 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| | |
|
|
| T |
2468192 |
aaggcttgtgttttcttcaacataaaaaattccttcatttataagatttggaataagtctaatgcagagagaatccttgtcttgaatgtttgaccattgc |
2468291 |
T |
|
| Q |
101 |
ttgcaatctttgccttaattataatttattattcttgaatttaccttcgtatttgattcacttcaatatctatagaattttgagcaagtcattgttctcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2468292 |
ttgcaatctttgccttaattataatttattattcttgaatttaccttcgtatttgattcacttcaatatctatagaattttgagcaagtcattgttctcc |
2468391 |
T |
|
| Q |
201 |
ataccggaagagatttgtttcacttgaagtagaaaagggatgcttttgtatagacaattagctgatccaaattttcgaccacatagcattggcttggatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
2468392 |
ataccggaagagatttgtttcacttgaagaagaaaagggatgcttttgtatagacaattagctgatccaaaatttcaaccacatagcattggcttggatt |
2468491 |
T |
|
| Q |
301 |
gagaacatagatgctgacattgatnnnnnnnnttccttcttaatgcataactactactttcaaaactttcttggtccacaaggtaatgcacaaaaggacn |
400 |
Q |
| |
|
||| ||||||||| ||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2468492 |
gagcacatagatgttgacattaataaaaaaa--tccttcttaatgcataagtactactttcaaaactttcttggtccacaaggtaacgcacaaaaggaca |
2468589 |
T |
|
| Q |
401 |
nnnnnnggtagttttctaatggatagttctttgtttgctcaccaagtgtgaagctctatatatggccacatcattcaaatgagaacaacgaat |
493 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2468590 |
aaaaaaggtagttttctaatggataattctttgtttgctcaccaagtgtgaagctctatatatggctacatcattcaaatgagaacaacgaat |
2468682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 487
Target Start/End: Complemental strand, 169095 - 169047
Alignment:
| Q |
439 |
tcaccaagtgtgaagctctatatatggccacatcattcaaatgagaaca |
487 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
169095 |
tcaccaagattgaagctctatatatggcaacatcattcaaatgaaaaca |
169047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University