View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4097_high_6 (Length: 493)
Name: NF4097_high_6
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4097_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 127 - 481
Target Start/End: Original strand, 43156832 - 43157193
Alignment:
| Q |
127 |
cgtcaaagtcgctcataactccaaaattccacggaaaaagtccaaggaatatgacatat-------agaaaataatacctttctatggtttcacatccta |
219 |
Q |
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| T |
43156832 |
cgtcaaagtcgctcataactccaaaattccacggaaaaagtccaaggaatatgacatatgatatatagaaaataatacctttctatggtttcacatccta |
43156931 |
T |
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| Q |
220 |
ttttacttttatttctccccttaagttggaaaatacacaaatgtgtaacatgggtttgttttgtggtgaggatagttggaaattagcgagtatttatctt |
319 |
Q |
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| T |
43156932 |
ttttacttttatttctccccttaagttggaaaatacacaaatgtgtaacatgggtttgttttgtggtgaggatagttggaaattagcgagtatttatctt |
43157031 |
T |
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| Q |
320 |
gttattccacactcatttttgtttttatgcttcatggcaagtcttcatggtccatccccaaacgtagtttctactctccatataaactaatgctactatg |
419 |
Q |
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| T |
43157032 |
gttattccacactcatttttgtttttatgcttcatggcaagtcttcatggtccatccccaaacgtagtttctactctccatataaactgctgctactatg |
43157131 |
T |
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| Q |
420 |
ggccatcaaacattcaactcgtgtttaaatacggatctattaacatacatatcgatgatgat |
481 |
Q |
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| T |
43157132 |
ggccatcaaacattcaactcgtgtttaaataaggatctattaacatacatatcgatgatgat |
43157193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 43156724 - 43156760
Alignment:
| Q |
19 |
cacaaggaaatttagaatatgctcatcatgagaatac |
55 |
Q |
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| T |
43156724 |
cacaaggaaatttagaatatgctcattatgaaaatac |
43156760 |
T |
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