View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4097_high_9 (Length: 390)
Name: NF4097_high_9
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4097_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 383
Target Start/End: Complemental strand, 19110856 - 19110486
Alignment:
| Q |
13 |
atgagaataataaaatgctcgagaattggatgacaaaaggtgttcgtcatggagagcttgttgccaggtttatatatttaagcacttaacattcaaaata |
112 |
Q |
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| T |
19110856 |
atgagaataataaaatgctcaagaattggatgacaaaaggtgttcgtcatggagagcttgttgccaggtttctatatttatttacttaacattcccaata |
19110757 |
T |
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| Q |
113 |
ttgtcatatgttaatatttacatcacattttacaaattctctaacaggggtatggataataagagactgagtaaaaatttgaagcttaaaggtgacaaga |
212 |
Q |
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| T |
19110756 |
ttctcttatgttaatatttacatcacgttttacaaattctctgtcaggggtatggatgataaaagactgagtaaaaatttgaagcttaaaggtgacaaga |
19110657 |
T |
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| Q |
213 |
aaggtttcttttccggtaagagcagaaaagttaattatgtcatatgtgtccttaatagtctttcggttctgaatgtgattgagaatgctggtggtgcttt |
312 |
Q |
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| T |
19110656 |
aaggtttcttttccagtaaaagcagaaaagttaattatgttatatgtgtccttaatggtctttcggttttgaatgtgattgagaatgccggtggtgcttt |
19110557 |
T |
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| Q |
313 |
ggaggcacggtatattgaacaaattgtttctactttcaattgtccattcctatcatttaaaggtatattct |
383 |
Q |
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| T |
19110556 |
ggaggaatggtatattcaacaaattgtttctactttcaattgcccattcctgtcatttaaaggtattttct |
19110486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 13 - 353
Target Start/End: Complemental strand, 19118063 - 19117716
Alignment:
| Q |
13 |
atgagaataataaaatgctcgagaattggatgacaaaaggtgttcgtcatggagagcttgttgccaggtttatatatttaagcac-------ttaacatt |
105 |
Q |
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| T |
19118063 |
atgagaataatgaaatgctgaagaattggatgacagaaggtgttcatcatggagagcttgttatcaggtttgaatattatagtacctgctacttcacatt |
19117964 |
T |
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| Q |
106 |
caaaatattgtcatatgttaatatttacatcacattttacaaattctctaacaggggtatggataataagagactgagtaaaaatttgaagcttaaaggt |
205 |
Q |
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| T |
19117963 |
cccaatattttcgtatgttaatatttacatcacggtttacaaattctctatcaggagtaaagataatcagacactgactgaaagtttgaagtgtaaaggt |
19117864 |
T |
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| Q |
206 |
gacaagaaaggtttcttttccggtaagagcagaaaagttaattatgtcatatgtgtccttaatagtctttcggttctgaatgtgattgagaatgctggtg |
305 |
Q |
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| T |
19117863 |
aacaagaaaggcttcttttccagtaagagcagaaaagttaattttgtaatatatgtccttaatggtctttcggttctgaatatgatggagaatgctgacg |
19117764 |
T |
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| Q |
306 |
gtgctttggaggcacggtatattgaacaaattgtttctactttcaatt |
353 |
Q |
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| T |
19117763 |
gtgctttcaaggcacggtatattgaagaaattgtttctactttcaatt |
19117716 |
T |
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