View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4097_low_14 (Length: 345)
Name: NF4097_low_14
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4097_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 8051840 - 8051503
Alignment:
| Q |
1 |
gatatcatcaaactcatcctccaccacttgttttccatcaaaagctagaactatgttgttatgtttggatatttttccaactttaagggatttgtaagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8051840 |
gatatcatcaaactcatcctccaccacttgttttccatcaaaagctagaaccatgttgttatgtttggatatttttccaactttaagggatttgtaagtg |
8051741 |
T |
|
| Q |
101 |
ttggatattttagtagggatatactctttggcagcatagtaaagatggtttgtacttccatcccaaaactgatcaatttgaagtgaaacttggttatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8051740 |
ttggatattttagtagggatatactctttggcagcatagtaaagatggtttgtacttccatcccaaaactgatcaatttgaagtgaaacttggttatttg |
8051641 |
T |
|
| Q |
201 |
gttggtaatctgtgaagaaacgtgttagctttgagatgatgaaatttctaagttttaagggtatgagatcattgattgcagttcttaaaagcatcatgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8051640 |
gttggtaatctgtgaagaaacgtgttagctttgagatgatgaaatttctaagttttaagggtatgagatcattgattgcagttcttaaaagcatcatgaa |
8051541 |
T |
|
| Q |
301 |
tgttgagaatgaagcatataactcaaacc-tgatgatg |
337 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
8051540 |
tgttgagaatgaagcatatacctcaaaccatgatgatg |
8051503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 319
Target Start/End: Complemental strand, 8059963 - 8059701
Alignment:
| Q |
56 |
ttgttatgtttggatatttttccaactttaagggatttgtaagtgttggatattttagtagggatatactctttggcagcatagtaaagatggtttgtac |
155 |
Q |
| |
|
|||||||| | |||||||||||||||||| |||||| ||||||| ||||||||| ||||||||| ||||||| |||| |||||| | ||| || | || |
|
|
| T |
8059963 |
ttgttatgatcggatatttttccaactttgagggatgtgtaagttttggatattctagtagggagatactctgtggctgcatagaagggat-tttgggac |
8059865 |
T |
|
| Q |
156 |
ttccatcccaaaactgatcaatttgaagtgaaacttggttatttggttggtaatctgtgaagaaacgtgttagctttgagatgatgaaatttctaagttt |
255 |
Q |
| |
|
|||||||||||| | | || ||||||||||| ||||| || || |||||||||| || ||||||| | || ||||||| ||||| ||| |||||| |
|
|
| T |
8059864 |
ttccatcccaaagcgggtcgatttgaagtgagacttgatttttaggttggtaatttgagaagaaagctcgtaactttgaggcaatgaagttttgaagttt |
8059765 |
T |
|
| Q |
256 |
taagggtatgagatcattgattgcagttcttaaaagcatcatgaatgttgagaatgaagcatat |
319 |
Q |
| |
|
||||||||||||||| |||| | |||||||||| | |||||| || || ||||| ||||||||| |
|
|
| T |
8059764 |
taagggtatgagatcgttgaatacagttcttaatatcatcataaaagtggagaaggaagcatat |
8059701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 32360630 - 32360672
Alignment:
| Q |
88 |
ggatttgtaagtgttggatattttagtagggatatactctttg |
130 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
32360630 |
ggatttgtaagtgttggatatttcagtagagatatactctttg |
32360672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 32 - 319
Target Start/End: Original strand, 47547747 - 47548034
Alignment:
| Q |
32 |
tttccatcaaaagctagaactatgttgttatgtttggatatttttccaactttaagggatttgtaagtgttggatattttagtagggatatactctttgg |
131 |
Q |
| |
|
|||||||||||||||| | || ||||||||| || ||||||||||||| ||| |||||| ||||||| ||||||||| ||||||||| ||||||||||| |
|
|
| T |
47547747 |
tttccatcaaaagctacgagtacgttgttatgattagatatttttccaattttgagggatgtgtaagttttggatattctagtagggagatactctttgg |
47547846 |
T |
|
| Q |
132 |
cagcatagtaaagatggtttgtacttccatcccaaaactgatcaatttgaagtgaaacttggttatttggttggtaatctgtgaagaaacgtgttagctt |
231 |
Q |
| |
|
| |||||| | |||| ||| | |||||||||||||| | | || ||||||||||| ||||| || || |||||||||| || ||||||| | || ||| |
|
|
| T |
47547847 |
ctgcatagaagagattgttgggacttccatcccaaagcgggtcgatttgaagtgagacttgatttttaggttggtaatttgagaagaaagctcgtaactt |
47547946 |
T |
|
| Q |
232 |
tgagatgatgaaatttctaagttttaagggtatgagatcattgattgcagttcttaaaagcatcatgaatgttgagaatgaagcatat |
319 |
Q |
| |
|
|||| ||||| ||| ||||||||||||| ||||||| |||| | |||||||||| | |||||| || || ||||| ||||||||| |
|
|
| T |
47547947 |
tgaggcaatgaagttttgaagttttaagggtttgagatcgttgaatacagttcttaatatcatcataaaagtggagaaggaagcatat |
47548034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University