View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4097_low_15 (Length: 335)
Name: NF4097_low_15
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4097_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 49468540 - 49468218
Alignment:
| Q |
1 |
aagctaataaatatgtgaggcaaatcaaatttttaaatcagatgctctaagttgttattttaccagaaggcgtccatggcttctccaaaagaaccttata |
100 |
Q |
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| T |
49468540 |
aagctaataaatatgttaggcaaatcaaacttttaaatcagatgctctaagttgttattttaccagaaggcgtccatggcttctccaaaagaaccttata |
49468441 |
T |
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| Q |
101 |
atatgaattgtcaaaagaagtagggcttccaaaacctttacttccaagagtgtgggctccagacaaagttactagttcttgtgttctgtgaaagaaaagt |
200 |
Q |
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| T |
49468440 |
atatgaattgtcaaaagaagtagggcttccaaaacctttacttccaagagtgtgggctccagacaaagctactagttcttgtgttctgtgaaagaaaagt |
49468341 |
T |
|
| Q |
201 |
tccaaatggataacaatgcataagcaaaactaattctggtgcaatatgctgaagattttatcccagtgacaaatattagcacatggtcaataattttgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49468340 |
tccaaatggataacaatgcataagcaaaactaattctggtgcaatatgctgaagattttatcccagtgacaaatattagcacatggtcaataattttgtt |
49468241 |
T |
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| Q |
301 |
cagtaaatcattattttcctcct |
323 |
Q |
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|||||||||| |||||||||||| |
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| T |
49468240 |
cagtaaatcactattttcctcct |
49468218 |
T |
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