View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4097_low_17 (Length: 314)

Name: NF4097_low_17
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4097_low_17
NF4097_low_17
[»] chr6 (13 HSPs)
chr6 (5-299)||(14024744-14025038)
chr6 (7-299)||(13875610-13875902)
chr6 (7-271)||(14014641-14014905)
chr6 (11-299)||(13473302-13473590)
chr6 (11-259)||(14109979-14110227)
chr6 (13-300)||(14022181-14022467)
chr6 (7-288)||(13863140-13863421)
chr6 (7-283)||(13893314-13893590)
chr6 (10-268)||(14046898-14047156)
chr6 (7-268)||(13931857-13932118)
chr6 (18-259)||(14084173-14084414)
chr6 (167-268)||(13911356-13911457)
chr6 (11-124)||(13911460-13911572)
[»] chr5 (3 HSPs)
chr5 (140-238)||(37164850-37164948)
chr5 (141-238)||(37139483-37139580)
chr5 (181-238)||(38749107-38749164)


Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 14025038 - 14024744
Alignment:
5 actgaatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14025038 actgaatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttca 14024939  T
105 gacgagattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaacttcacagggaaaattccttcaagaattggaaagt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14024938 gacgagattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaacttcacagggaaaattccttcaagaattggaaagt 14024839  T
205 taatatcacttgactttcttgatttgtcacgaaataagttgcttggttcaattccgtctagtctttcccgaatagatcgacttgctgtgctagat 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14024838 taatatcacttgactttcttgatttgtcacgaaataagttgcttggttcaattccgtctagtctttcccgaatagatcgacttgctgtgctagat 14024744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 7 - 299
Target Start/End: Original strand, 13875610 - 13875902
Alignment:
7 tgaatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcaga 106  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||| |||||| ||| || |||||  ||||| | || ||||||||||||||| |    
13875610 tgaatgcactcttaacatggaaaggtgtagaacaagtgttcaacaacaatcaattgtttcttctaaaaagtgtagatctctcgagcaatcacttttcaca 13875709  T
107 cgagattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaacttcacagggaaaattccttcaagaattggaaagtta 206  Q
     ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
13875710 agagattccacctgaaatagctaatttgattcaattggtctcattgaacttatcaagaaataacttcacagggaaaattccttcaagaattggaaagcta 13875809  T
207 atatcacttgactttcttgatttgtcacgaaataagttgcttggttcaattccgtctagtctttcccgaatagatcgacttgctgtgctagat 299  Q
    | ||||||||||||||||||||||||  ||||||||||| ||||||||||||| ||||||||||| | |||||| || |||| |||| |||||    
13875810 acatcacttgactttcttgatttgtctagaaataagttgattggttcaattccttctagtctttctcaaatagaccggcttggtgtgttagat 13875902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 14014905 - 14014641
Alignment:
7 tgaatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcaga 106  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||| ||||||||||||||| |||||||||||||||| |||||    
14014905 tgaatgcattcttgacatggaaaggtgtagaacaagagttcaacaacaatggcttgtctcttctgaaaagcatagatctatccagcaatcacttctcaga 14014806  T
107 cgagattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaacttcacagggaaaattccttcaagaattggaaagtta 206  Q
     ||||||||||| ||||| ||  ||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||  ||||||||| ||    
14014805 agagattccaccagaaatagcaaatttgattcaattggtctcgttgaacttatcaagaaacaacttgacggggaaaattccttcaaatattggaaagcta 14014706  T
207 atatcacttgactttcttgatttgtcacgaaataagttgcttggttcaattccgtctagtctttc 271  Q
    | ||||||||||||||||||||| ||| ||||||| |||||| |||||||||| |||||||||||    
14014705 acatcacttgactttcttgatttctcaagaaataatttgctttgttcaattccatctagtctttc 14014641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 13473302 - 13473590
Alignment:
11 tgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacgag 110  Q
    ||||||||| || ||||||||||||||| || ||||||||||||||| ||||| |||  | |||||||||||| |||| ||||||||||||||||| |||    
13473302 tgcattctttacctggaaaggtgtagaagaactgttcaacaacaatggattgtttcttttaaaaagcatagatctatcaagcaatcacttttcagaggag 13473401  T
111 attccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaacttcacagggaaaattccttcaagaattggaaagttaatat 210  Q
    ||||||| |||||| || |||||||| ||||||||||| |||||||||||||||||||| || |||||||||||||||||||  ||||||||  ||| ||    
13473402 attccacttgaaatagcagatttgattcaattggtctctttgaacttatcaagaaacaattttacagggaaaattccttcaaatattggaaaactaagat 13473501  T
211 cacttgactttcttgatttgtcacgaaataagttgcttggttcaattccgtctagtctttcccgaatagatcgacttgctgtgctagat 299  Q
    |||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||| |||| |||| |||||    
13473502 cacttgactttcttgacttggcacgaaataagttgctaggttcaattccttctagtctttcccaaatagatcggcttggtgtgttagat 13473590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 14110227 - 14109979
Alignment:
11 tgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacgag 110  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||  |||| ||| || |||||||||||  |||||||||||||||| ||||| |||    
14110227 tgcattcttgacatggaaaggtgtagaacaagagtttaacaacaatggcttgtatcttctaaaaagcatagacctatccagcaatcacttctcagaagag 14110128  T
111 attccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaacttcacagggaaaattccttcaagaattggaaagttaatat 210  Q
    ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||  ||||||||  ||| ||    
14110127 attccacctgaaattgcagatttgattcaattggtctcgttgaacttatcaagaaacaacttgacagggaaaattccttcaaatattggaaatctaacat 14110028  T
211 cacttgactttcttgatttgtcacgaaataagttgcttggttcaattcc 259  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||    
14110027 cacttgactttcttgatttgtcacgaaataacttgtttggttcaattcc 14109979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 14022467 - 14022181
Alignment:
13 cattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacgagat 112  Q
    ||||||| ||||||||||||||||| ||||| |||||||||||||||||||  || || |||||||||||| | || ||||||||||||||||  |||||    
14022467 cattcttaacatggaaaggtgtagaccaagtattcaacaacaatgaattgttgcttctaaaaagcatagatctctcaagcaatcacttttcaggagagat 14022368  T
113 tccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaacttcacagggaaaattccttcaagaattggaaagttaatatca 212  Q
    |||||||||||| ||  ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||| ||| ||||    
14022367 tccacctgaaatagcgaatttgattcaattggtctcattgaacttatcaagaaacaacttcacaggaaaaattccttcaaatattggaaagctaacatca 14022268  T
213 cttgactttcttgatttgtcacgaaataagttgcttggttcaattccgtctagtctttcccgaatagatcgacttgctgtgctagatg 300  Q
    ||||||||||||||||| |||| ||| ||||||| ||||| |||||| ||||||||||| | ||| |||||||||  |||| ||||||    
14022267 cttgactttcttgatttatcacaaaacaagttgcgtggtt-aattccttctagtctttctcaaattgatcgacttagtgtgttagatg 14022181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 7 - 288
Target Start/End: Original strand, 13863140 - 13863421
Alignment:
7 tgaatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaat-gaattgtctctcctgaaaagcatagatttatccagcaatcacttttcag 105  Q
    |||||||||| |||||||||||||||||||||||| |||||| ||||||| || |||| ||| || |||||||||||| |||| |||||||||||||| |    
13863140 tgaatgcattgttgacatggaaaggtgtagaacaactgttcatcaacaatcgatttgt-tcttctaaaaagcatagatctatcaagcaatcacttttcgg 13863238  T
106 acgagattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaacttcacagggaaaattccttcaagaattggaaagtt 205  Q
    | ||||||||||||||||| ||  ||||||| |||||||||||| | || ||||||||||||||||| |||||||||||||||||||  || |||| |||    
13863239 aagagattccacctgaaatagcaaatttgattcaattggtctcactaaatttatcaagaaacaacttgacagggaaaattccttcaaatatcggaaggtt 13863338  T
206 aatatcacttgactttcttgatttgtcacgaaataagttgcttggttcaattccgtctagtctttcccgaatagatcgacttg 288  Q
    || ||||||||| |||||||||||||||| ||| |||||| ||||||||||||| ||||||||||||| ||||||||| ||||    
13863339 aacatcacttgaatttcttgatttgtcacaaaacaagttgtttggttcaattccttctagtctttcccaaatagatcggcttg 13863421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 7 - 283
Target Start/End: Original strand, 13893314 - 13893590
Alignment:
7 tgaatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcaga 106  Q
    |||||||||||||||  |||||||||||||||||| | ||||||||||||| ||||  ||| || ||||| |||||| | || ||||||||||||||| |    
13893314 tgaatgcattcttgatgtggaaaggtgtagaacaatttttcaacaacaatggattgcttcttctaaaaagtatagatctctcaagcaatcacttttcaca 13893413  T
107 cgagattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaacttcacagggaaaattccttcaagaattggaaagtta 206  Q
    |||||||||||||||||| ||   |||| | ||||| |||||| | || ||||||||||||||||| |||||||||||||||||||  || ||||| |||    
13893414 cgagattccacctgaaatagcaactttggttcaattagtctcactaaatttatcaagaaacaacttgacagggaaaattccttcaaatatcggaaaatta 13893513  T
207 atatcacttgactttcttgatttgtcacgaaataagttgcttggttcaattccgtctagtctttcccgaatagatcg 283  Q
    | |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||  |||||||||    
13893514 acatcacttgactttcttgatttgtcacaaaataagttgcttggttcaattccttctagtctttccaaaatagatcg 13893590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 10 - 268
Target Start/End: Complemental strand, 14047156 - 14046898
Alignment:
10 atgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacga 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||  ||| || |||  | ||||| | || |||||||| |||||||| ||    
14047156 atgcattcttgacatggaaaggtgtagaacatgtgttcaacaacaatggattggttcttctaaaagtcgtagatctttcaagcaatcatttttcagaaga 14047057  T
110 gattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaacttcacagggaaaattccttcaagaattggaaagttaata 209  Q
     ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||  ||||||||  |||      
14047056 aattccacctgaaattgcagatttgattcaattggtctcattgaatttatcaagaaacaacttcgcagggaaaattccatcaaatattggaaatctaacc 14046957  T
210 tcacttgactttcttgatttgtcacgaaataagttgcttggttcaattccgtctagtct 268  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||  |||||||    
14046956 tcacttgactcccttgatttgtcacgaaataagttgcttggttcaattcctcctagtct 14046898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 7 - 268
Target Start/End: Complemental strand, 13932118 - 13931857
Alignment:
7 tgaatgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcaga 106  Q
    |||||||||| ||||||||||||||||||||||| || ||||||||||||| ||||  |||  | |||  ||||||| | || || ||||| ||||||||    
13932118 tgaatgcattgttgacatggaaaggtgtagaacatgtcttcaacaacaatggattggttcttttaaaagtcatagatctctcaagtaatcatttttcaga 13932019  T
107 cgagattccacctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaacttcacagggaaaattccttcaagaattggaaagtta 206  Q
     ||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||  ||||||||  ||    
13932018 agagattccacctgaaatagcagatttgattcaattggtctcattgaatttatcaagaaacaacttcacagggaaaattccatcaaatattggaaatcta 13931919  T
207 atatcacttgactttcttgatttgtcacgaaataagttgcttggttcaattccgtctagtct 268  Q
    |  |||||||||| |||||||||||| ||||||||||||||||||||||||||  |||||||    
13931918 acttcacttgactctcttgatttgtctcgaaataagttgcttggttcaattcctcctagtct 13931857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 14084414 - 14084173
Alignment:
18 ttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacgagattccac 117  Q
    ||||| |||||||||||||||||| ||||||| ||||||| ||| | ||| || |||||||||||  | || ||||||||||||||||  ||||||||||    
14084414 ttgacttggaaaggtgtagaacaaatgttcaaaaacaatggattatttcttctaaaaagcatagacctctcaagcaatcacttttcaggagagattccac 14084315  T
118 ctgaaattgctgatttgatccaattggtctcattgaacttatcaagaaacaacttcacagggaaaattccttcaagaattggaaagttaatatcacttga 217  Q
     |||||| ||  ||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||||  ||  |||||||||    
14084314 atgaaatagcaaatttgattcaattggtctctttgaatttatcaagaaacaacttcacagggaaaattccttcaaatattggaaatctagcatcacttga 14084215  T
218 ctttcttgatttgtcacgaaataagttgcttggttcaattcc 259  Q
    |||||||||||| |||||||||||||||||||||||||||||    
14084214 ctttcttgatttttcacgaaataagttgcttggttcaattcc 14084173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 167 - 268
Target Start/End: Complemental strand, 13911457 - 13911356
Alignment:
167 caacttcacagggaaaattccttcaagaattggaaagttaatatcacttgactttcttgatttgtcacgaaataagttgcttggttcaattccgtctagt 266  Q
    |||||| |||||||||||||||||||   | |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||    
13911457 caactttacagggaaaattccttcaaatttcggaaagttaacatcacttgactttcttgatttgtcacgaaataacttgcttggttcaattcctcctagt 13911358  T
267 ct 268  Q
    ||    
13911357 ct 13911356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 13911572 - 13911460
Alignment:
11 tgcattcttgacatggaaaggtgtagaacaagtgttcaacaacaatgaattgtctctcctgaaaagcatagatttatccagcaatcacttttcagacgag 110  Q
    |||||||||||  |||||||||||||||||| ||||||||||||| | ||||  ||| || ||||| |||||| | || ||||||||||||||| | |||    
13911572 tgcattcttgatgtggaaaggtgtagaacaattgttcaacaacaa-ggattgcttcttctaaaaagtatagatctctcaagcaatcacttttcacaagag 13911474  T
111 attccacctgaaat 124  Q
    ||||||||||||||    
13911473 attccacctgaaat 13911460  T

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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 37164850 - 37164948
Alignment:
140 attggtctcattgaacttatcaagaaacaacttcacagggaaaattccttcaagaattggaaagttaatatcacttgactttcttgatttgtcacgaaa 238  Q
    |||||| |||||||| |||||||| ||||| || |||||| ||||| ||||||  ||||||||||||| ||||||||| |||||||| |||||| ||||    
37164850 attggtgtcattgaatttatcaagcaacaatttgacaggggaaattacttcaatgattggaaagttaacatcacttgaatttcttgacttgtcaagaaa 37164948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 37139483 - 37139580
Alignment:
141 ttggtctcattgaacttatcaagaaacaacttcacagggaaaattccttcaagaattggaaagttaatatcacttgactttcttgatttgtcacgaaa 238  Q
    ||||| |||||||| |||||| | ||||| || |||||  |||||||||| |  ||||||| ||||||||||||||| | |||||| |||||| ||||    
37139483 ttggtgtcattgaatttatcatgcaacaagttgacaggagaaattccttcgaagattggaaggttaatatcacttgattctcttgacttgtcaagaaa 37139580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 38749107 - 38749164
Alignment:
181 aaattccttcaagaattggaaagttaatatcacttgactttcttgatttgtcacgaaa 238  Q
    ||||| ||||||  ||||||| ||||| ||||||||| |||||||| |||||||||||    
38749107 aaattacttcaaagattggaaggttaacatcacttgaatttcttgacttgtcacgaaa 38749164  T

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