View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4097_low_19 (Length: 300)
Name: NF4097_low_19
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4097_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 3427442 - 3427158
Alignment:
| Q |
1 |
tacaaaagtacaaaaaagccattgcactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattgtgcttattgtga |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
3427442 |
tacaaaagtacaaaaaagccattgaactcatgaaagccttaccatccaatgatccacgtagtttcatacaacaagcaaacatccattgtgcttattgtga |
3427343 |
T |
|
| Q |
101 |
tggtgcatattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctatgaa |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427342 |
tggtgcatattcccaagttggtttccctaatcttgatcttcaagttcataattcttggctcttttttccttttcatagatggtatctttatttctatgaa |
3427243 |
T |
|
| Q |
201 |
agaatcttgggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctcctaatggcatgcaatttccct |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3427242 |
agaatcttgggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctccaaatggcatgcaatttccct |
3427158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 3433633 - 3433349
Alignment:
| Q |
1 |
tacaaaagtacaaaaaagccattgcactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattgtgcttattgtga |
100 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||||||||||||| || ||||||||||||||||| |
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| T |
3433633 |
tacaaaaatacaaaaaagccattgaactcatgaaagccttaccatccaatgatccacgtaatttcatacaacaagcaaacatccattgtgcttattgtga |
3433534 |
T |
|
| Q |
101 |
tggtgcatattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctatgaa |
200 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433533 |
tggtgcatattcccaagttggttttcctaatcttgatcttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctatgaa |
3433434 |
T |
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| Q |
201 |
agaatcttgggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctcctaatggcatgcaatttccct |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433433 |
agaatcttgggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctcctaatggcatgcaatttccct |
3433349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 3 - 285
Target Start/End: Original strand, 11896836 - 11897118
Alignment:
| Q |
3 |
caaaagtacaaaaaagccattgcactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattgtgcttattgtgatg |
102 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||| ||||||||||| | || |||||||||||||||| |
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| T |
11896836 |
caaaaatacaaaaaagccattgaactcatgaaagccttaccatccaatgatccacgtagtttcatgcaacaagcaaacgtccactgtgcttattgtgatg |
11896935 |
T |
|
| Q |
103 |
gtgcatattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctatgaaag |
202 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
11896936 |
gtgcatattcccaagttggcttccctaaccttgatcttcaagttcatggctcttggctcttttttccttttcataggtggtacctttatttctatgaaag |
11897035 |
T |
|
| Q |
203 |
aatcttgggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctcctaatggcatgcaatttccct |
285 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11897036 |
gatcttaggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctcctaatggcatgcgatttccct |
11897118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 3 - 285
Target Start/End: Original strand, 11912169 - 11912451
Alignment:
| Q |
3 |
caaaagtacaaaaaagccattgcactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattgtgcttattgtgatg |
102 |
Q |
| |
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||||| ||||| |||||||||| |||| |||||| ||||| |||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
11912169 |
caaaaatacaagaaagccattgagctcacgaaagcattaccatccaatgatccacgtagtttcatacaacaagcaaacatccattgtgcttattgtgatg |
11912268 |
T |
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| Q |
103 |
gtgcatattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctatgaaag |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| || |
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| T |
11912269 |
gtgcatattcccaagttggtttccctaaccttgatcttcaagttcataactcttggctcttttttccttttcatagatggtacctttatttccatgagag |
11912368 |
T |
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| Q |
203 |
aatcttgggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctcctaatggcatgcaatttccct |
285 |
Q |
| |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11912369 |
aatcttgggtagtttgatcaatgatccagcctttgctttaccattttggaactttgacgctcctaatggcatgcaatttccct |
11912451 |
T |
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