View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4097_low_2 (Length: 626)

Name: NF4097_low_2
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4097_low_2
NF4097_low_2
[»] chr4 (46 HSPs)
chr4 (27-607)||(48870569-48871149)
chr4 (27-607)||(48886255-48886835)
chr4 (27-607)||(48875873-48876453)
chr4 (351-463)||(48705169-48705281)
chr4 (179-315)||(7790381-7790517)
chr4 (179-315)||(7771696-7771832)
chr4 (73-261)||(48899095-48899283)
chr4 (72-319)||(45365737-45365984)
chr4 (78-261)||(45371600-45371780)
chr4 (78-255)||(49043691-49043868)
chr4 (372-573)||(48852739-48852940)
chr4 (93-261)||(48853036-48853204)
chr4 (194-317)||(7765941-7766064)
chr4 (186-317)||(7773456-7773587)
chr4 (198-312)||(7237386-7237500)
chr4 (184-319)||(45384521-45384662)
chr4 (125-313)||(48734981-48735169)
chr4 (194-317)||(7786763-7786886)
chr4 (179-261)||(7908657-7908739)
chr4 (185-257)||(7813836-7813908)
chr4 (388-463)||(48903120-48903195)
chr4 (179-261)||(7878738-7878820)
chr4 (200-314)||(48147358-48147472)
chr4 (185-255)||(48864396-48864466)
chr4 (75-255)||(49038404-49038578)
chr4 (185-257)||(7800996-7801068)
chr4 (372-472)||(49043997-49044097)
chr4 (95-149)||(37826533-37826587)
chr4 (372-458)||(45371876-45371962)
chr4 (283-336)||(43596153-43596206)
chr4 (178-255)||(48156052-48156129)
chr4 (517-566)||(48735352-48735401)
chr4 (197-317)||(37826632-37826752)
chr4 (419-463)||(50250626-50250670)
chr4 (352-455)||(48147501-48147604)
chr4 (210-319)||(48903255-48903361)
chr4 (283-317)||(7878045-7878079)
chr4 (433-463)||(48898893-48898923)
chr4 (285-319)||(50669382-50669416)
chr4 (429-458)||(7771565-7771594)
chr4 (429-458)||(7790250-7790279)
chr4 (517-570)||(48705329-48705382)
chr4 (365-449)||(48735203-48735287)
chr4 (541-581)||(48898775-48898815)
chr4 (381-453)||(49048392-49048464)
chr4 (197-261)||(50666670-50666734)
[»] chr3 (5 HSPs)
chr3 (73-333)||(47451418-47451678)
chr3 (77-255)||(11015013-11015191)
chr3 (77-259)||(11005450-11005632)
chr3 (178-259)||(11024126-11024207)
chr3 (515-576)||(11005891-11005952)
[»] chr8 (7 HSPs)
chr8 (67-255)||(15349244-15349432)
chr8 (77-208)||(4030310-4030441)
chr8 (372-450)||(4031711-4031789)
chr8 (95-149)||(12200806-12200860)
chr8 (95-149)||(12445234-12445288)
chr8 (283-317)||(4962247-4962281)
chr8 (433-463)||(15349039-15349069)
[»] chr5 (5 HSPs)
chr5 (176-312)||(9120067-9120203)
chr5 (224-310)||(179364-179450)
chr5 (179-260)||(29688485-29688566)
chr5 (388-457)||(9119928-9120000)
chr5 (87-247)||(42561868-42562025)
[»] chr2 (1 HSPs)
chr2 (77-208)||(29350830-29350961)
[»] chr6 (3 HSPs)
chr6 (73-255)||(21016182-21016364)
chr6 (390-458)||(21015994-21016062)
chr6 (269-313)||(14197375-14197419)
[»] chr7 (1 HSPs)
chr7 (194-268)||(48884172-48884246)
[»] chr1 (1 HSPs)
chr1 (89-151)||(24367624-24367686)


Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 27 - 607
Target Start/End: Complemental strand, 48871149 - 48870569
Alignment:
Q  27 atagccatggatccatcccatgtaacattccatttagagaaacgccctaacaactgtccattgtcgtcatacttcaccaatccaataccactatgtgctc 126  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48871149 atagccacggatccatcccatgtaacattccatttagagaaacgccctaacaactgtccattgtcatcatacttcaccaatccaataccactatgtgctc 48871050  T
Q  127 caataatatcaccactttttgtacagcacaatggggagaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcac 226  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48871049 caataatatcaccactttttgtacagcacaatggggaaaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcac 48870950  T
Q  227 tttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaatacccacaaaccacagttgtta 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48870949 tttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaatacccacaaaccacagttgtta 48870850  T
Q  327 ggatcatagttataattgtaataatcatctggtaaaagcatatcaaaaagttgcctttccgttaaatcaaaggcaaggataacattcttttgtaaatcat 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||     
T  48870849 ggatcatagttataattgtaataatcatctggtaaaagcatatcaaaaagttgcctttccgttaaatcaaaggcaaggataacattctttcctaaaccag 48870750  T
Q  427 cacgataagccaaccaatgaatagccccattatagagggaacctacgctgggcttatcatcaatgccattcacaaaagggctgtcagtacactcaatttg 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  48870749 cacgataagccaaccaatgaatagccccattatagagggaacctacgctgggcttatcatcaatgccattcgcaaaagggctgtcagtacactcaatttg 48870650  T
Q  527 tatccaggtattggctctcaatgagaaaaactcgaagtgtgatgaaatataagggaagaatgataaaaccactaagtaatc 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48870649 tatccaggtattggctctcaatgagaaaaactcgaagtgtgatgaaatataagggaagaatgataaaaccactaagtaatc 48870569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 27 - 607
Target Start/End: Complemental strand, 48886835 - 48886255
Alignment:
Q  27 atagccatggatccatcccatgtaacattccatttagagaaacgccctaacaactgtccattgtcgtcatacttcaccaatccaataccactatgtgctc 126  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48886835 atagccacggatccatcccatgtaacattccatttagagaaacgccctaacaactgtccattgtcatcatacttcaccaatccaataccactatgtgctc 48886736  T
Q  127 caataatatcaccactttttgtacagcacaatggggagaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcac 226  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48886735 caataatatcaccactttttgtacagcacaatggggaaaaggactcatcagaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcac 48886636  T
Q  227 tttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaatacccacaaaccacagttgtta 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48886635 tttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaatacccacaaaccacagttgtta 48886536  T
Q  327 ggatcatagttataattgtaataatcatctggtaaaagcatatcaaaaagttgcctttccgttaaatcaaaggcaaggataacattcttttgtaaatcat 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||     
T  48886535 ggatcatagttataattgtaataatcatctggtaaaagcatatcaaaaagttgcctttccgttaaatcaaaggcaaggataacattctttcctaaaccag 48886436  T
Q  427 cacgataagccaaccaatgaatagccccattatagagggaacctacgctgggcttatcatcaatgccattcacaaaagggctgtcagtacactcaatttg 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  48886435 cacgataagccaaccaatgaatagccccattatagagggaacctacgctgggcttatcatcaatgccattcgcaaaagggctgtcagtacactcaatttg 48886336  T
Q  527 tatccaggtattggctctcaatgagaaaaactcgaagtgtgatgaaatataagggaagaatgataaaaccactaagtaatc 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48886335 tatccaggtattggctctcaatgagaaaaactcgaagtgtgatgaaatataagggaagaatgataaaaccactaagtaatc 48886255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 27 - 607
Target Start/End: Complemental strand, 48876453 - 48875873
Alignment:
Q  27 atagccatggatccatcccatgtaacattccatttagagaaacgccctaacaactgtccattgtcgtcatacttcaccaatccaataccactatgtgctc 126  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48876453 atagccacggatccatcccatgtaacattccatttagagaaacgccctaacaactgtccattgtcatcatacttcaccaatccaataccactatgtgctc 48876354  T
Q  127 caataatatcaccactttttgtacagcacaatggggagaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcac 226  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48876353 caataatatcaccactttttgtacagcacaatggggaaaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcac 48876254  T
Q  227 tttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaatacccacaaaccacagttgtta 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48876253 tttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaatacccacaaaccacagttgtta 48876154  T
Q  327 ggatcatagttataattgtaataatcatctggtaaaagcatatcaaaaagttgcctttccgttaaatcaaaggcaaggataacattcttttgtaaatcat 426  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  48876153 ggatcatagttataattgtaataatcatctggcaaatgcatatcaaaaagttgcctttcagtgaaatcaaaggcaaggataacattcttttgtaaatcat 48876054  T
Q  427 cacgataagccaaccaatgaatagccccattatagagggaacctacgctgggcttatcatcaatgccattcacaaaagggctgtcagtacactcaatttg 526  Q
    |||||||||||||||||||||||||||| | ||||||||||||||| | |  ||| ||||||| | ||||   |||||||  || || ||||||||||||    
T  48876053 cacgataagccaaccaatgaatagccccgtgatagagggaacctacaccgcacttctcatcaaaggcattactaaaaggggagtgaggacactcaatttg 48875954  T
Q  527 tatccaggtattggctctcaatgagaaaaactcgaagtgtgatgaaatataagggaagaatgataaaaccactaagtaatc 607  Q
    ||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| |||||||||||||||| ||||||||    
T  48875953 tatccaggtattggctctcaatgagaaaaactcgaagcgtgatgccatataaggggagaatgataaaaccaccaagtaatc 48875873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 351 - 463
Target Start/End: Original strand, 48705169 - 48705281
Alignment:
Q  351 tcatctggtaaaagcatatcaaaaagttgcctttccgttaaatcaaaggcaaggataacattcttttgtaaatcatcacgataagccaaccaatgaatag 450  Q
    |||||||| ||||||||||||||||||| ||||||| |||||||||||||||  ||||||| |||| ||||||||| |||||||||||||||||||||||    
T  48705169 tcatctggcaaaagcatatcaaaaagttccctttccattaaatcaaaggcaacaataacatcctttcgtaaatcatgacgataagccaaccaatgaatag 48705268  T
Q  451 ccccattatagag 463  Q
    |||||||||||||    
T  48705269 ccccattatagag 48705281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 179 - 315
Target Start/End: Complemental strand, 7790517 - 7790381
Alignment:
Q  179 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccata 278  Q
    |||| |||||| ||||||||||||||| || ||||||||||| | |||||||||||| ||||||||||| ||||||||||||| || || ||||||| ||    
T  7790517 aatggcatcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcattatcataatcctta 7790418  T
Q  279 gcatatagactgagaaattccccaaatacccacaaac 315  Q
    ||  ||| |||||||||||| ||||||||||||||||    
T  7790417 gcgcataaactgagaaattctccaaatacccacaaac 7790381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 179 - 315
Target Start/End: Complemental strand, 7771832 - 7771696
Alignment:
Q  179 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccata 278  Q
    |||| |||||||||||||||||||||| || ||||| ||||| | |||||||||||| ||||||||||| ||| ||||||||| || || ||||||| ||    
T  7771832 aatggcatcaacagaaagaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcattatcataatcctta 7771733  T
Q  279 gcatatagactgagaaattccccaaatacccacaaac 315  Q
    ||  ||| |||||||||||| ||||||||||||||||    
T  7771732 gcgcataaactgagaaattctccaaatacccacaaac 7771696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 73 - 261
Target Start/End: Complemental strand, 48899283 - 48899095
Alignment:
Q  73 ctaacaactgtccattgtcgtcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggagaaggactc 172  Q
    ||||||||| ||||||||| |||||||||||||||||||   ||| || || |||||||||||  |||||||||||||||||||||||| | ||| ||      
T  48899283 ctaacaactctccattgtcatcatacttcaccaatccaaattcaccatctgttccaataatatagccactttttgtacagcacaatgggtaaaagtacat 48899184  T
Q  173 atcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtat 261  Q
    |  || |||| |||||| || |||||||||||||  ||||||||| || || ||||| ||||| ||||||||||| ||||||| |||||    
T  48899183 agtgggaatgccatcaataggaagaacaagagtcactgtccaagaggattttactttatattctttcatcacccatatttcaactgtat 48899095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 72 - 319
Target Start/End: Original strand, 45365737 - 45365984
Alignment:
Q  72 cctaacaactgtccattgtcgtcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggagaaggact 171  Q
    |||||||||||||| |  || | |||||||||||||| | ||  |  || || ||||||||||||||| ||||||||| |||| || ||||| ||| | |    
T  45365737 cctaacaactgtccttcatcattatacttcaccaatctattaagatcatctgttccaataatatcaccgctttttgtagagcataaaggggaaaagtatt 45365836  T
Q  172 catcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattata 271  Q
     |  || |||| |||||| || ||||||  |||||||||||||||||||   |||||| ||||| ||||||||||| ||||||| ||||| || || |||    
T  45365837 gagtgggaatgccatcaataggaagaacgtgagtctttgtccaagacgaacgcactttatattctttcatcacccatatttcaactgtatcattatcata 45365936  T
Q  272 atccatagcatatagactgagaaattccccaaatacccacaaaccaca 319  Q
    |||||||||  | | ||||| |||||| ||||||||||||||||||||    
T  45365937 atccatagcccaaaaactgaaaaattctccaaatacccacaaaccaca 45365984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 78 - 261
Target Start/End: Original strand, 45371600 - 45371780
Alignment:
Q  78 aactgtccattgtcgtcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggagaaggactcatcgg 177  Q
    |||||||||||||| ||||||||||||||||||  ||||   | || |||||| |||||||| ||||||||||| ||||||||||| ||| ||  |   |    
T  45371600 aactgtccattgtcatcatacttcaccaatccacgacca---tctgttccaattatatcaccgctttttgtacaacacaatggggaaaagtaccgagttg 45371696  T
Q  178 aaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtat 261  Q
     || | |||| | || |||||||| |||||| ||||||||||| | |||||||||||| ||||| ||||| ||||||| |||||    
T  45371697 gaacgccatcgataggaagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgtat 45371780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 78 - 255
Target Start/End: Original strand, 49043691 - 49043868
Alignment:
Q  78 aactgtccattgtcgtcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggagaaggactcatcgg 177  Q
    |||||||| || || |||||||||||||||||||   ||| ||  | |||||||||||||||| |||||||||| || | ||| | |||| | | |  ||    
T  49043691 aactgtcctttttcatcatacttcaccaatccaacttcaccatcagttccaataatatcaccaatttttgtacaacatattggagcgaagtaatgagtgg 49043790  T
Q  178 aaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaa 255  Q
     |||| |||||| ||||| |||||||||||| ||||| ||||| | |||||||||||| ||||||||||| |||||||    
T  49043791 gaatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaa 49043868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 372 - 573
Target Start/End: Complemental strand, 48852940 - 48852739
Alignment:
Q  372 aaaagttgcctttccgttaaatcaaaggcaaggataacattctt---ttgtaaatcatcacgataagccaaccaatgaatagccccattatagagggaac 468  Q
    ||||||| ||||||| ||||||||||||| |  |||||||| ||   | ||||||||| |||| |||||||||||||||||||||||||| | || || |    
T  48852940 aaaagtttcctttccattaaatcaaaggccacaataacattattcattggtaaatcatgacgaaaagccaaccaatgaatagccccattaaaaagcgacc 48852841  T
Q  469 ctacgctgggcttatcatcaatgccattcacaaaagggctgtcagtacactcaatttgtatccaggtattggctctcaatgagaaaaactcgaagtgtga 568  Q
    |||| |||||   ||||||   | ||||||   |||||  || ||||| |||||||| | |||| | ||| |||||||||||||||||||| || |||||    
T  48852840 ctactctggg---atcatcggaggcattcatgtaagggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtga 48852744  T
Q  569 tgaaa 573  Q
    |||||    
T  48852743 tgaaa 48852739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 93 - 261
Target Start/End: Complemental strand, 48853204 - 48853036
Alignment:
Q  93 tcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggagaaggactcatcggaaatgtcatcaacag 192  Q
    |||||||||||||||||| || ||| ||  | |||||||||||||||||| |||||||| || | |||||| ||| | | |  || ||||  |  || ||    
T  48853204 tcatacttcaccaatccactatcaccatccgttccaataatatcaccactctttgtacaacatattggggaaaagtagtgagtgggaatggaactaaaag 48853105  T
Q  193 aaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtat 261  Q
    |||||||||||||||| |||||||||||   |||||||||||| ||||| ||||| ||||||| |||||    
T  48853104 aaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtat 48853036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 194 - 317
Target Start/End: Complemental strand, 7766064 - 7765941
Alignment:
Q  194 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgaga 293  Q
    ||||||||| ||||| ||||| ||||| | |||||||||||| ||||||||||| ||||||||||||| || | ||  |||| || |  ||| |||||||    
T  7766064 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgaga 7765965  T
Q  294 aattccccaaatacccacaaacca 317  Q
    ||||| ||| ||||||||||||||    
T  7765964 aattctccagatacccacaaacca 7765941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 7773456 - 7773587
Alignment:
Q  186 tcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatata 285  Q
    |||||||||||||||||||  ||  |||||||||| | |||||||||||| ||||||||||| ||||||| ||||| || |  || |||| ||||  |||    
T  7773456 tcaacagaaagaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccata 7773555  T
Q  286 gactgagaaattccccaaatacccacaaacca 317  Q
     ||| ||| |||| ||||||||||||||||||    
T  7773556 cactaagatattctccaaatacccacaaacca 7773587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 198 - 312
Target Start/End: Original strand, 7237386 - 7237500
Alignment:
Q  198 acaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaatt 297  Q
    |||||||| || |||||| |||| | || ||||||||| ||||||||||| ||| ||||||||| || || |||||||  |||  |||||||||||||||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaatt 7237485  T
Q  298 ccccaaatacccaca 312  Q
    | |||||||||||||    
T  7237486 ctccaaatacccaca 7237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 184 - 319
Target Start/End: Original strand, 45384521 - 45384662
Alignment:
Q  184 catcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattg------tattatcattataatccat 277  Q
    |||||| || ||||||| ||||||||||||||||||| | |||||| ||||| ||||||||||| ||||||| ||      || ||| || ||||| |||    
T  45384521 catcaaaaggaagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaactgaaatattaatattatcataatgcat 45384620  T
Q  278 agcatatagactgagaaattccccaaatacccacaaaccaca 319  Q
    |||  | | |||||||||||| ||||||||||||||||||||    
T  45384621 agctcaaaaactgagaaattctccaaatacccacaaaccaca 45384662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 313
Target Start/End: Original strand, 48734981 - 48735169
Alignment:
Q  125 tccaataatatcaccactttttgtacagcacaatggggagaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttc 224  Q
    |||||||||||||||| |||||||||| || |||||||| |||  ||| | || | || |||||||||| | | || |||| || ||||||||||| |||    
T  48734981 tccaataatatcaccattttttgtacaacaaaatggggaaaagctctcgttgggagtgccatcaacagacacagcatgagttttagtccaagacgaattc 48735080  T
Q  225 actttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaatacccacaa 313  Q
    ||||||||||| ||||||  ||| ||   || |||||||| | || ||| |||||   | | |||||||||||| ||||||||||||||    
T  48735081 actttgtattctttcatcgtccatatcataactgtattattactaaaattcatagtcgaaaaactgagaaattctccaaatacccacaa 48735169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 194 - 317
Target Start/End: Complemental strand, 7786886 - 7786763
Alignment:
Q  194 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgaga 293  Q
    |||||||||||||||  |||||||  | | ||| |||||||| ||||||||||| ||||||||||||| || | ||  |||| || |  ||| |||||||    
T  7786886 aagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgaga 7786787  T
Q  294 aattccccaaatacccacaaacca 317  Q
    ||||||||| ||||||||||||||    
T  7786786 aattccccagatacccacaaacca 7786763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 7908739 - 7908657
Alignment:
Q  179 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtat 261  Q
    |||| |||||||||||||||||||||| ||  ||||||| || | |||||||||||| ||||||||||| ||||||| |||||    
T  7908739 aatggcatcaacagaaagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaagtgtat 7908657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 7813908 - 7813836
Alignment:
Q  185 atcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaatt 257  Q
    ||||||||||||||||||||| ||  |||||||||| | |||||||||||| |||| |||||| |||||||||    
T  7813908 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaatt 7813836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 463
Target Start/End: Complemental strand, 48903195 - 48903120
Alignment:
Q  388 ttaaatcaaaggcaaggataacattcttttgtaaatcatcacgataagccaaccaatgaatagccccattatagag 463  Q
    |||||||||||||||  ||||||||||||  |||||||| | || |||||||| ||||||||||||||||| ||||    
T  48903195 ttaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaactaatgaatagccccattaaagag 48903120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 7878820 - 7878738
Alignment:
Q  179 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtat 261  Q
    |||| ||||||| |||||||||||||| ||  ||||||| || | |||||||||||| ||||||||||| ||||||| |||||    
T  7878820 aatgacatcaaccgaaagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtat 7878738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 200 - 314
Target Start/End: Original strand, 48147358 - 48147472
Alignment:
Q  200 aagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattcc 299  Q
    ||||||||| ||||||||||| | |||||||||||| ||||||||||| ||||||| | |  |||  | || ||||||| |   ||||||||||||||      
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactctgctattgtcatgatccatacccgttagactgagaaattgt 48147457  T
Q  300 ccaaatacccacaaa 314  Q
    |||||||||||||||    
T  48147458 ccaaatacccacaaa 48147472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 48864466 - 48864396
Alignment:
Q  185 atcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaa 255  Q
    ||||| || |||||||||| |||| ||||||||||| | |||||||||||| ||||||||||| |||||||    
T  48864466 atcaataggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 48864396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 75 - 255
Target Start/End: Original strand, 49038404 - 49038578
Alignment:
Q  75 aacaactgtccattgtcgtcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggagaaggactcat 174  Q
    |||||| |||| ||||| |||||||||| ||||| | ||  || || || ||||||||||| ||||||||||||||| || |  ||||| ||| |         
T  49038404 aacaaccgtcctttgtcatcatacttcatcaatcgattataaccatctgttccaataatatgaccactttttgtacaacatataggggaaaagta----- 49038498  T
Q  175 cggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaa 255  Q
     || |||| ||  || ||| |||||||||||||| ||||||||||| |  ||||||||||| ||||||||||| |||||||    
T  49038499 -gggaatgccactaatagacagaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaa 49038578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 7801068 - 7800996
Alignment:
Q  185 atcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaatt 257  Q
    ||||||||||||||||||||| ||  |||||||||| | ||||||||| || |||| |||||| |||||||||    
T  7801068 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaatt 7800996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 472
Target Start/End: Original strand, 49043997 - 49044097
Alignment:
Q  372 aaaagttgcctttccgttaaatcaaaggcaaggataacattcttttgtaaatcatcacgataagccaaccaatgaatagccccattatagagggaaccta 471  Q
    ||||||| ||||||  |||||||||||||||  ||||||||| ||  |||||||  | || |||||||||| ||||||||||||||| |||| || ||||    
T  49043997 aaaagtttcctttcaattaaatcaaaggcaacaataacattcattgataaatcaagatgaaaagccaaccagtgaatagccccattaaagagcgacccta 49044096  T
Q  472 c 472  Q
    |    
T  49044097 c 49044097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 37826533 - 37826587
Alignment:
Q  95 atacttcaccaatccaataccactatgtgctccaataatatcaccactttttgta 149  Q
    ||||||||||||||||| |||||  | || |||||||||||||||||||||||||    
T  37826533 atacttcaccaatccaagaccaccgtctgatccaataatatcaccactttttgta 37826587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 458
Target Start/End: Original strand, 45371876 - 45371962
Alignment:
Q  372 aaaagttgcctttccgttaaatcaaaggcaaggataacattcttttgtaaatcatcacgataagccaaccaatgaatagccccatta 458  Q
    ||||||| || |||| |||||||||||||||| |||||| || |   |||||||| |||| ||| |||||||| |||||||||||||    
T  45371876 aaaagtttccgttccattaaatcaaaggcaagaataacactcatcgataaatcatgacgaaaagacaaccaataaatagccccatta 45371962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 43596153 - 43596206
Alignment:
Q  283 atagactgagaaattccccaaatacccacaaaccacagttgttaggatcatagt 336  Q
    ||||||| |||||||||||||||||||||| | |||| || |||||||||||||    
T  43596153 atagactaagaaattccccaaatacccacatatcacaatttttaggatcatagt 43596206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 48156052 - 48156129
Alignment:
Q  178 aaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaa 255  Q
    ||||| |||||| || ||| |||||||| || |||||||| || | |||||||||||| ||||||||||| |||||||    
T  48156052 aaatgccatcaataggaaggacaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaa 48156129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 566
Target Start/End: Original strand, 48735352 - 48735401
Alignment:
Q  517 actcaatttgtatccaggtattggctctcaatgagaaaaactcgaagtgt 566  Q
    ||||||||| | |||||||||| |||||||||||||||||||| ||||||    
T  48735352 actcaatttctttccaggtattagctctcaatgagaaaaactcaaagtgt 48735401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 197 - 317
Target Start/End: Original strand, 37826632 - 37826752
Alignment:
Q  197 aacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaat 296  Q
    |||||||||||| ||||||||||| | || ||||||||| ||||||||||  | || || ||||| || || |    |||| ||  ||||||| ||||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccgtaatttaagtgtatgattataactgcccatggcccatagactaagaaat 37826731  T
Q  297 tccccaaatacccacaaacca 317  Q
    || ||||||||||||||||||    
T  37826732 tctccaaatacccacaaacca 37826752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 419 - 463
Target Start/End: Original strand, 50250626 - 50250670
Alignment:
Q  419 taaatcatcacgataagccaaccaatgaatagccccattatagag 463  Q
    |||||||| |||| |||||||||||||||||||||||||| ||||    
T  50250626 taaatcataacgaaaagccaaccaatgaatagccccattaaagag 50250670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 455
Target Start/End: Original strand, 48147501 - 48147604
Alignment:
Q  352 catctggtaaaagcatatcaaaaagttgcctttccgttaaatcaaaggcaaggataacattcttttgtaaatcatcacgataagccaaccaatgaatagc 451  Q
    ||||||| ||| |||| || ||||||  ||||||| |||||||||| ||||  ||||||| | ||  ||||||||   || |||||||||||||||||||    
T  48147501 catctggaaaaggcatctctaaaagtctcctttccattaaatcaaatgcaataataacatcccttgctaaatcattgtgaaaagccaaccaatgaatagc 48147600  T
Q  452 ccca 455  Q
    ||||    
T  48147601 ccca 48147604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 319
Target Start/End: Complemental strand, 48903361 - 48903255
Alignment:
Q  210 gtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaataccc 309  Q
    ||||||||| | | |||||||||||| ||||||||||| ||||||| | |||||||    ||||||| |||  |||| || |||||||| ||||||||||    
T  48903361 gtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatc---gtaatccaaagcccataggctaagaaattctccaaataccc 48903265  T
Q  310 acaaaccaca 319  Q
    | ||| ||||    
T  48903264 ataaatcaca 48903255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 283 - 317
Target Start/End: Complemental strand, 7878079 - 7878045
Alignment:
Q  283 atagactgagaaattccccaaatacccacaaacca 317  Q
    |||||||||||||||| ||||||||||||||||||    
T  7878079 atagactgagaaattctccaaatacccacaaacca 7878045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 463
Target Start/End: Complemental strand, 48898923 - 48898893
Alignment:
Q  433 aagccaaccaatgaatagccccattatagag 463  Q
    |||||||||||||||||||||||||||||||    
T  48898923 aagccaaccaatgaatagccccattatagag 48898893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 319
Target Start/End: Complemental strand, 50669416 - 50669382
Alignment:
Q  285 agactgagaaattccccaaatacccacaaaccaca 319  Q
    |||||||||||||| ||||||||||||||||||||    
T  50669416 agactgagaaattctccaaatacccacaaaccaca 50669382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 458
Target Start/End: Complemental strand, 7771594 - 7771565
Alignment:
Q  429 cgataagccaaccaatgaatagccccatta 458  Q
    ||||||||||||||||||||||||||||||    
T  7771594 cgataagccaaccaatgaatagccccatta 7771565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 458
Target Start/End: Complemental strand, 7790279 - 7790250
Alignment:
Q  429 cgataagccaaccaatgaatagccccatta 458  Q
    ||||||||||||||||||||||||||||||    
T  7790279 cgataagccaaccaatgaatagccccatta 7790250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 570
Target Start/End: Original strand, 48705329 - 48705382
Alignment:
Q  517 actcaatttgtatccaggtattggctctcaatgagaaaaactcgaagtgtgatg 570  Q
    ||||||||| | |||| |||||  ||||||||||||||||||| ||||||||||    
T  48705329 actcaatttctttccatgtattaactctcaatgagaaaaactcaaagtgtgatg 48705382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 48735203 - 48735287
Alignment:
Q  365 catatcaaaaagttgcctttccgttaaatcaaaggcaaggataacattcttttgtaaatcatcacgataagccaaccaatgaata 449  Q
    ||||| |||||||| ||||| | ||||||||||| ||   ||||||  |||  ||||||||| | ||||||||||||||||||||    
T  48735203 catataaaaaagtttcctttacattaaatcaaagacagcaataacacccttacgtaaatcatgatgataagccaaccaatgaata 48735287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 581
Target Start/End: Complemental strand, 48898815 - 48898775
Alignment:
Q  541 ctctcaatgagaaaaactcgaagtgtgatgaaatataaggg 581  Q
    ||||||||||||||||||| ||||||||| |||||| ||||    
T  48898815 ctctcaatgagaaaaactccaagtgtgataaaatattaggg 48898775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 453
Target Start/End: Original strand, 49048392 - 49048464
Alignment:
Q  381 ctttccgttaaatcaaaggcaaggataacattcttttgtaaatcatcacgataagccaaccaatgaatagccc 453  Q
    ||||||||||||||||||||||  ||||||||| |   |||||||  | || |||||||||| ||||||||||    
T  49048392 ctttccgttaaatcaaaggcaacaataacattcatcgataaatcaagatgaaaagccaaccagtgaatagccc 49048464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 50666734 - 50666670
Alignment:
Q  197 aacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtat 261  Q
    ||||||||| || |||||||| || | |||||||||||| | ||||||||| | |||||||||||    
T  50666734 aacaagagttttagtccaagatgaatgcactttgtattcttacatcacccataattcaattgtat 50666670  T

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Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 73 - 333
Target Start/End: Original strand, 47451418 - 47451678
Alignment:
Q  73 ctaacaactgtccattgtcgtcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggagaaggactc 172  Q
    ||||||||||||| ||||| | |||||| ||||||||  || ||  || || ||||||||||||||||||||||||| ||   || ||| | ||| |||     
T  47451418 ctaacaactgtcctttgtcattatacttaaccaatccggtatcatcatctgttccaataatatcaccactttttgtagaggttaaggggtaaaagtactg 47451517  T
Q  173 atcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataa 272  Q
    |  || |||| |||||| || ||||||||||||||||  ||||||||| || ||||||||||| ||||||||||| ||||||| | ||| || || | ||    
T  47451518 agagggaatgccatcaataggaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaa 47451617  T
Q  273 tccatagcatatagactgagaaattccccaaatacccacaaaccacagttgttaggatcat 333  Q
    |||| | |   |||||| |||||||| |||||||||||||||||||| ||| |||| ||||    
T  47451618 tccagaacccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcat 47451678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 77 - 255
Target Start/End: Original strand, 11015013 - 11015191
Alignment:
Q  77 caactgtccattgtcgtcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggagaaggactcatcg 176  Q
    |||||| |||||| | |||||||| |||||| ||  ||||| || || |||||||||| |||||||||||||| |||| | |||||   |  |||||  |    
T  11015013 caactgaccattgccatcatactttaccaattcaccaccaccatttgttccaataataccaccactttttgtagagcatattgggggataatactcaatg 11015112  T
Q  177 gaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaa 255  Q
    ||||||||||||| ||| || |||||||| ||   ||||||||| | |||||||||||| ||||| ||||| |||||||    
T  11015113 gaaatgtcatcaatagataggacaagagttttaacccaagacgaatgcactttgtattctttcataacccatatttcaa 11015191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 77 - 259
Target Start/End: Original strand, 11005450 - 11005632
Alignment:
Q  77 caactgtccattgtcgtcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggagaaggactcatcg 176  Q
    |||||| |||||| | |||||||||||||||||| |||||| || ||  |||||||||| ||||| ||||||| |||| | ||| |    | ||| |  |    
T  11005450 caactgaccattgccatcatacttcaccaatccagtaccaccatttgtcccaataatatgaccacattttgtaaagcatattggcggatcgtactgaatg 11005549  T
Q  177 gaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgt 259  Q
     ||||| |||||| ||| |  ||||||| ||| ||||||||||| | |||||||||||| ||||| ||||| |||||||||||    
T  11005550 caaatgccatcaatagataagacaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgt 11005632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 11024126 - 11024207
Alignment:
Q  178 aaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgt 259  Q
    |||||| ||||| ||| || ||||||||||| ||||||||||| | |||||||||||| ||||| ||||| |||||||||||    
T  11024126 aaatgtaatcaatagataggacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgt 11024207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 576
Target Start/End: Original strand, 11005891 - 11005952
Alignment:
Q  515 acactcaatttgtatccaggtattggctctcaatgagaaaaactcgaagtgtgatgaaatat 576  Q
    ||||||||||| | |||| ||||| |||||||||||||||||||  ||  ||||||||||||    
T  11005891 acactcaatttctttccatgtattcgctctcaatgagaaaaacttcaaacgtgatgaaatat 11005952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 7e-26; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 67 - 255
Target Start/End: Complemental strand, 15349432 - 15349244
Alignment:
Q  67 aacgccctaacaactgtccattgtcgtcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggagaa 166  Q
    ||||| |||||||||| |||||||| ||||||||||||||| ||| ||||  || |  |||||||||||||||||| ||||||| |||||| ||| | ||    
T  15349432 aacgctctaacaactgcccattgtcatcatacttcaccaattcaacaccaacatttattccaataatatcaccactctttgtacggcacaaagggtaaaa 15349333  T
Q  167 ggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaa 255  Q
    | ||  |   | |   ||||||| |  |||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||    
T  15349332 gtacagagttggatcatcatcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 77 - 208
Target Start/End: Original strand, 4030310 - 4030441
Alignment:
Q  77 caactgtccattgtcgtcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggagaaggactcatcg 176  Q
    ||||||||| ||||| ||||||||||||||| || |||||| || || ||||||||||||||||||| ||||| |||||| |||||| ||| ||| |  |    
T  4030310 caactgtcctttgtcatcatacttcaccaattcagtaccaccatatgttccaataatatcaccacttattgtagagcacattggggaaaagtacttaatg 4030409  T
Q  177 gaaatgtcatcaacagaaagaacaagagtctt 208  Q
    |||||| |||||| ||| ||||||||||||||    
T  4030410 gaaatgccatcaatagacagaacaagagtctt 4030441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 372 - 450
Target Start/End: Original strand, 4031711 - 4031789
Alignment:
Q  372 aaaagttgcctttccgttaaatcaaaggcaaggataacattcttttgtaaatcatcacgataagccaaccaatgaatag 450  Q
    |||||||  |||||||||||||||||||||| |||||||||  |   |||||||| |||| ||||||||||||||||||    
T  4031711 aaaagttttctttccgttaaatcaaaggcaacgataacatttatcgataaatcatgacgaaaagccaaccaatgaatag 4031789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 12200860 - 12200806
Alignment:
Q  95 atacttcaccaatccaataccactatgtgctccaataatatcaccactttttgta 149  Q
    ||||||||||||||||  ||||||||  | |||||||||||||||||||||||||    
T  12200860 atacttcaccaatccatgaccactatcagttccaataatatcaccactttttgta 12200806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 12445288 - 12445234
Alignment:
Q  95 atacttcaccaatccaataccactatgtgctccaataatatcaccactttttgta 149  Q
    ||||||||||||||||  ||||||||  | |||||||||||||||||||||||||    
T  12445288 atacttcaccaatccatgaccactatcagttccaataatatcaccactttttgta 12445234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 283 - 317
Target Start/End: Original strand, 4962247 - 4962281
Alignment:
Q  283 atagactgagaaattccccaaatacccacaaacca 317  Q
    |||||||||||||||| ||||||||||||||||||    
T  4962247 atagactgagaaattctccaaatacccacaaacca 4962281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 463
Target Start/End: Complemental strand, 15349069 - 15349039
Alignment:
Q  433 aagccaaccaatgaatagccccattatagag 463  Q
    |||||||||||||||||||||||||||||||    
T  15349069 aagccaaccaatgaatagccccattatagag 15349039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 312
Target Start/End: Complemental strand, 9120203 - 9120067
Alignment:
Q  176 ggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatcc 275  Q
    ||||||| | |||| ||| | ||||||||| ||  ||||||| || | |||||||||||| ||||||||||| ||||||| ||||| || |  | |||||    
T  9120203 ggaaatgccgtcaatagacaaaacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatcc 9120104  T
Q  276 atagcatatagactgagaaattccccaaatacccaca 312  Q
    |||||  ||| |||||||||||| |||||||||||||    
T  9120103 atagcccatatactgagaaattctccaaatacccaca 9120067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 179450 - 179364
Alignment:
Q  224 cactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaataccca 310  Q
    |||||||||||| ||||||||||| ||||||| ||||| || || ||||||||||||  ||| |||||||||||  |||||||||||    
T  179450 cactttgtattctttcatcacccatatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaataccca 179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 29688566 - 29688485
Alignment:
Q  179 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgta 260  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| | ||| |||||||  ||||||||||| ||||||| ||||    
T  29688566 aatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaactgta 29688485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 457
Target Start/End: Complemental strand, 9120000 - 9119928
Alignment:
Q  388 ttaaatcaaaggcaaggataacattcttttgtaa---atcatcacgataagccaaccaatgaatagccccatt 457  Q
    |||||||||||||||| |||| || |||||||||   ||||| |||| |||| ||||||||||||| ||||||    
T  9120000 ttaaatcaaaggcaagaataagatccttttgtaaatgatcatgacgaaaagcgaaccaatgaatagacccatt 9119928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 247
Target Start/End: Original strand, 42561868 - 42562025
Alignment:
Q  87 ttgtcgtcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggagaaggactcatcggaaatgtcat 186  Q
    ||||||| ||| |||||||||||  |||||| || || |||||||||||||||| |||||||| || | || ||| | ||| |      || ||||||||    
T  42561868 ttgtcgttatatttcaccaatccggtaccaccatctgttccaataatatcaccattttttgtataggataaagggcaaaagta------gggaatgtcat 42561961  T
Q  187 ca---acagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcaccca 247  Q
    ||   | || |||||||||| |||| |||||||| || | |||||||||||| |||||||||||    
T  42561962 cataaataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcaccca 42562025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 208
Target Start/End: Complemental strand, 29350961 - 29350830
Alignment:
Q  77 caactgtccattgtcgtcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggagaaggactcatcg 176  Q
    ||||||||| ||||| | ||||||||||||| || |||||| ||  | ||||||||||||||||| | ||||| |||||| |||||  ||  ||| || |    
T  29350961 caactgtcctttgtcataatacttcaccaattcagtaccaccatccgttccaataatatcaccacctattgtagagcacattggggcaaaatacttattg 29350862  T
Q  177 gaaatgtcatcaacagaaagaacaagagtctt 208  Q
    |||||| |||||| ||| ||||||||||||||    
T  29350861 gaaatgccatcaatagacagaacaagagtctt 29350830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 73 - 255
Target Start/End: Complemental strand, 21016364 - 21016182
Alignment:
Q  73 ctaacaactgtccattgtcgtcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggagaaggactc 172  Q
    |||||||||||||||| || |||||| |||||||||||     || || || ||||||||||||||||||||||||||| || | ||| |||||  |       
T  21016364 ctaacaactgtccattttcatcatacctcaccaatccagctgtaccatctgttccaataatatcaccactttttgtacaacatattggagagaaataacg 21016265  T
Q  173 atcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaa 255  Q
    |  || ||||||||||| ||| | |  ||||||||| ||||||||||| |  ||||||||||| ||||| ||||| |||||||    
T  21016264 agtgggaatgtcatcaatagagaaagtaagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaa 21016182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 390 - 458
Target Start/End: Complemental strand, 21016062 - 21015994
Alignment:
Q  390 aaatcaaaggcaaggataacattcttttgtaaatcatcacgataagccaaccaatgaatagccccatta 458  Q
    ||||||||||||| |||||| ||| ||  |||||||| |||| ||||||||||||||||||||||||||    
T  21016062 aaatcaaaggcaatgataactttcattgataaatcatgacgaaaagccaaccaatgaatagccccatta 21015994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 14197375 - 14197419
Alignment:
Q  269 ataatccatagcatatagactgagaaattccccaaatacccacaa 313  Q
    ||||||| ||||| ||||||||||| |||| ||||||||||||||    
T  14197375 ataatccgtagcaaatagactgagagattctccaaatacccacaa 14197419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 48884246 - 48884172
Alignment:
Q  194 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcatt 268  Q
    ||||||||||||||| |||||||||   | |||||||||||| ||||||||| | ||||||| | ||| ||||||    
T  48884246 aagaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaactttatcatcatt 48884172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 24367686 - 24367624
Alignment:
Q  89 gtcgtcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtaca 151  Q
    ||||||||| || | ||||||| ||| ||||| || |||||||||||||||| ||||||||||    
T  24367686 gtcgtcatattttatcaatccagtacgactatttgttccaataatatcaccagtttttgtaca 24367624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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