View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4097_low_20 (Length: 297)

Name: NF4097_low_20
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4097_low_20
NF4097_low_20
[»] chr8 (7 HSPs)
chr8 (81-251)||(34091352-34091522)
chr8 (248-290)||(34091678-34091720)
chr8 (29-65)||(14112485-14112521)
chr8 (29-65)||(38679688-38679724)
chr8 (29-63)||(34924888-34924922)
chr8 (124-221)||(34091498-34091595)
chr8 (29-65)||(42025491-42025527)
[»] chr7 (5 HSPs)
chr7 (21-65)||(23417344-23417388)
chr7 (22-70)||(12633371-12633419)
chr7 (24-65)||(36657739-36657780)
chr7 (29-62)||(19625367-19625400)
chr7 (37-65)||(24841269-24841297)
[»] chr1 (8 HSPs)
chr1 (19-67)||(34969734-34969782)
chr1 (21-67)||(42934171-42934217)
chr1 (29-65)||(15581518-15581554)
chr1 (29-65)||(42365838-42365874)
chr1 (29-67)||(50678281-50678319)
chr1 (29-66)||(48046403-48046440)
chr1 (29-64)||(7741058-7741093)
chr1 (25-67)||(35306901-35306943)
[»] scaffold0224 (1 HSPs)
scaffold0224 (21-67)||(12554-12600)
[»] scaffold0110 (1 HSPs)
scaffold0110 (21-67)||(38696-38742)
[»] chr4 (6 HSPs)
chr4 (29-70)||(41223803-41223844)
chr4 (29-67)||(35033963-35034001)
chr4 (22-65)||(46944003-46944046)
chr4 (29-63)||(3121182-3121216)
chr4 (29-67)||(35291995-35292033)
chr4 (29-67)||(48084627-48084665)
[»] chr3 (6 HSPs)
chr3 (29-68)||(27011130-27011169)
chr3 (19-65)||(25045314-25045360)
chr3 (29-65)||(32278315-32278351)
chr3 (29-65)||(39440006-39440042)
chr3 (25-65)||(35231957-35231997)
chr3 (29-61)||(44713184-44713216)
[»] chr2 (6 HSPs)
chr2 (29-70)||(18000082-18000123)
chr2 (29-67)||(6476766-6476804)
chr2 (29-71)||(7444823-7444865)
chr2 (29-62)||(44246301-44246334)
chr2 (29-65)||(10354207-10354243)
chr2 (31-67)||(14329055-14329091)
[»] chr5 (3 HSPs)
chr5 (30-69)||(30084853-30084892)
chr5 (29-65)||(11617181-11617217)
chr5 (25-68)||(16597819-16597862)
[»] scaffold0039 (1 HSPs)
scaffold0039 (33-67)||(56861-56895)
[»] scaffold0022 (2 HSPs)
scaffold0022 (29-65)||(44265-44301)
scaffold0022 (29-65)||(77986-78022)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 81 - 251
Target Start/End: Original strand, 34091352 - 34091522
Alignment:
Q  81 tggtattagatcttcctcgcatgcaaggaatcacaagtcttcatgttgaaggtgactttaaagtcctaattgatacggtgatacagaacattaacttcca 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34091352 tggtattagatcttcctcgcatgcaaggaatcacaagtcttcatgttgaaggtgactttaaagtcctaattgatacggtgatacaaaacattaacttcca 34091451  T
Q  181 tgtaaacatatctgctctagtctatcgtattagacaactctattcgtgttgaaagtgactttaaaatgcta 251  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34091452 tgcaaacatatctgctctagtctgtcgtattagacaactctattcgtgttgaaagtgactttaaaatgcta 34091522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 290
Target Start/End: Original strand, 34091678 - 34091720
Alignment:
Q  248 gctatgaaagtccatctaattccttttattttagcctttgctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34091678 gctatgaaagtccatctaattccttttattttagcctttgctt 34091720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 14112485 - 14112521
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagcct 65  Q
    |||||||||||||||||||||||||||||||||||||    
T  14112485 tccattccatcactctccatcaatccaaacatagcct 14112521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 38679724 - 38679688
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagcct 65  Q
    |||||||||||||||||||||||||||||||||||||    
T  38679724 tccattccatcactctccatcaatccaaacatagcct 38679688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 34924888 - 34924922
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagc 63  Q
    |||||||||||||||||||||||||||||||||||    
T  34924888 tccattccatcactctccatcaatccaaacatagc 34924922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 34091498 - 34091595
Alignment:
Q  124 tgttgaaggtgactttaaagtcctaattgatacggtgatacagaacattaacttccatgtaaacatatctgctctagtctatcgtattagacaactct 221  Q
    ||||||| ||||||||||| | |||||| ||| ||| ||| | |||||||||||| |  |||||||| | |||||||| | ||| |||||||||||||    
T  34091498 tgttgaaagtgactttaaaatgctaattaatatggtaatagataacattaacttcaacataaacatacccgctctagtgtgtcgcattagacaactct 34091595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 42025491 - 42025527
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagcct 65  Q
    ||||||||||||||||||||||||||||||| |||||    
T  42025491 tccattccatcactctccatcaatccaaacaaagcct 42025527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 23417344 - 23417388
Alignment:
Q  21 catcccactccattccatcactctccatcaatccaaacatagcct 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23417344 catcccactccattccatcactctccatcaatccaaacatagcct 23417388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 12633419 - 12633371
Alignment:
Q  22 atcccactccattccatcactctccatcaatccaaacatagccttagtt 70  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| ||||    
T  12633419 atcccacaccattccatcactctccaccaatccaaacatagcctaagtt 12633371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 36657739 - 36657780
Alignment:
Q  24 cccactccattccatcactctccatcaatccaaacatagcct 65  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  36657739 cccattccattccatcactctccatcaatccaaatatagcct 36657780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 19625400 - 19625367
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatag 62  Q
    ||||||||| ||||||||||||||||||||||||    
T  19625400 tccattccaccactctccatcaatccaaacatag 19625367  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 24841269 - 24841297
Alignment:
Q  37 atcactctccatcaatccaaacatagcct 65  Q
    |||||||||||||||||||||||||||||    
T  24841269 atcactctccatcaatccaaacatagcct 24841297  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 34969782 - 34969734
Alignment:
Q  19 ttcatcccactccattccatcactctccatcaatccaaacatagcctta 67  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34969782 ttcatcccactccattccatcactctccatcaatccaaacatagtctta 34969734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 42934217 - 42934171
Alignment:
Q  21 catcccactccattccatcactctccatcaatccaaacatagcctta 67  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  42934217 catcccactccattccatcactctccaccaatccaaacatagcctta 42934171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 15581554 - 15581518
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagcct 65  Q
    |||||||||||||||||||||||||||||||||||||    
T  15581554 tccattccatcactctccatcaatccaaacatagcct 15581518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 42365874 - 42365838
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagcct 65  Q
    |||||||||||||||||||||||||||||||||||||    
T  42365874 tccattccatcactctccatcaatccaaacatagcct 42365838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 50678281 - 50678319
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagcctta 67  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  50678281 tccattccatcactctccatcaatccaaacatagtctta 50678319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 48046440 - 48046403
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagcctt 66  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  48046440 tccattccaccactctccatcaatccaaacatagcctt 48046403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 64
Target Start/End: Complemental strand, 7741093 - 7741058
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagcc 64  Q
    ||||||||| ||||||||||||||||||||||||||    
T  7741093 tccattccaccactctccatcaatccaaacatagcc 7741058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 35306901 - 35306943
Alignment:
Q  25 ccactccattccatcactctccatcaatccaaacatagcctta 67  Q
    |||||||||||||| ||  ||||||||||||||||||||||||    
T  35306901 ccactccattccattacaatccatcaatccaaacatagcctta 35306943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 12554 - 12600
Alignment:
Q  21 catcccactccattccatcactctccatcaatccaaacatagcctta 67  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  12554 catcccactccattccatcactctccaccaatccaaacatagcctta 12600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 38696 - 38742
Alignment:
Q  21 catcccactccattccatcactctccatcaatccaaacatagcctta 67  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  38696 catcccactccattccatcactctccatcaatcaaaacatagcctta 38742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 41223803 - 41223844
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagccttagtt 70  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41223803 tccattccatcactctccatcaatccaaacatagccttagtt 41223844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 35033963 - 35034001
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagcctta 67  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  35033963 tccattccaccactctccatcaatccaaacatagcctta 35034001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 46944046 - 46944003
Alignment:
Q  22 atcccactccattccatcactctccatcaatccaaacatagcct 65  Q
    |||||| ||||||||||||| ||||| |||||||||||||||||    
T  46944046 atcccattccattccatcacactccaccaatccaaacatagcct 46944003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 3121216 - 3121182
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagc 63  Q
    ||||||||| |||||||||||||||||||||||||    
T  3121216 tccattccaccactctccatcaatccaaacatagc 3121182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 35292033 - 35291995
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagcctta 67  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  35292033 tccattccaccactctccatcaatccaaacataacctta 35291995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 48084665 - 48084627
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagcctta 67  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  48084665 tccattccaccactctccatcaatccaaacataccctta 48084627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 27011169 - 27011130
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagccttag 68  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27011169 tccattccatcactctccatcaatccaaacatagccttag 27011130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 25045360 - 25045314
Alignment:
Q  19 ttcatcccactccattccatcactctccatcaatccaaacatagcct 65  Q
    ||||| ||| ||||||||| |||||||||||||||||||||||||||    
T  25045360 ttcattccattccattccaccactctccatcaatccaaacatagcct 25045314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 32278351 - 32278315
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagcct 65  Q
    ||||||||| |||||||||||||||||||||||||||    
T  32278351 tccattccaccactctccatcaatccaaacatagcct 32278315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 39440006 - 39440042
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagcct 65  Q
    ||||||||| |||||||||||||||||||||||||||    
T  39440006 tccattccaccactctccatcaatccaaacatagcct 39440042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 35231957 - 35231997
Alignment:
Q  25 ccactccattccatcactctccatcaatccaaacatagcct 65  Q
    |||||||||||||| ||  ||||||||||||||||||||||    
T  35231957 ccactccattccattacaatccatcaatccaaacatagcct 35231997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 44713216 - 44713184
Alignment:
Q  29 tccattccatcactctccatcaatccaaacata 61  Q
    ||||||||| |||||||||||||||||||||||    
T  44713216 tccattccaccactctccatcaatccaaacata 44713184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 18000082 - 18000123
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagccttagtt 70  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  18000082 tccattccatcactctccatcaatccaaacatagtcttagtt 18000123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 6476804 - 6476766
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagcctta 67  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  6476804 tccattccaccactctccatcaatccaaacatagcctta 6476766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 7444823 - 7444865
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagccttagttt 71  Q
    ||||||||||||||||||||||||||||||| ||||| |||||    
T  7444823 tccattccatcactctccatcaatccaaacaaagcctcagttt 7444865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 44246334 - 44246301
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatag 62  Q
    ||||||||||||||||||||||||||||||||||    
T  44246334 tccattccatcactctccatcaatccaaacatag 44246301  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 10354243 - 10354207
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagcct 65  Q
    ||||||||| |||||||||||||||||||||||||||    
T  10354243 tccattccaccactctccatcaatccaaacatagcct 10354207  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 14329055 - 14329091
Alignment:
Q  31 cattccatcactctccatcaatccaaacatagcctta 67  Q
    |||||||||||||||||||||| ||||||||||||||    
T  14329055 cattccatcactctccatcaattcaaacatagcctta 14329091  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 30084892 - 30084853
Alignment:
Q  30 ccattccatcactctccatcaatccaaacatagccttagt 69  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  30084892 ccattccaccactctccatcaatccaaacatagccttagt 30084853  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 11617217 - 11617181
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagcct 65  Q
    ||||||||| |||||||||||||||||||||||||||    
T  11617217 tccattccaccactctccatcaatccaaacatagcct 11617181  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 16597819 - 16597862
Alignment:
Q  25 ccactccattccatcactctccatcaatccaaacatagccttag 68  Q
    |||||||||||||| ||  |||||||||||||||||||||||||    
T  16597819 ccactccattccattacattccatcaatccaaacatagccttag 16597862  T

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Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 56895 - 56861
Alignment:
Q  33 ttccatcactctccatcaatccaaacatagcctta 67  Q
    |||||||||||||||||||||||||||||||||||    
T  56895 ttccatcactctccatcaatccaaacatagcctta 56861  T

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Target: scaffold0022 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 44265 - 44301
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagcct 65  Q
    ||||||||| |||||||||||||||||||||||||||    
T  44265 tccattccaccactctccatcaatccaaacatagcct 44301  T

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Target: scaffold0022; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 77986 - 78022
Alignment:
Q  29 tccattccatcactctccatcaatccaaacatagcct 65  Q
    ||||||||| |||||||||||||||||||||||||||    
T  77986 tccattccaccactctccatcaatccaaacatagcct 78022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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