View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4097_low_24 (Length: 283)

Name: NF4097_low_24
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4097_low_24
NF4097_low_24
[»] chr5 (10 HSPs)
chr5 (16-269)||(38986873-38987127)
chr5 (16-120)||(39725745-39725849)
chr5 (16-134)||(39879125-39879249)
chr5 (16-134)||(40411830-40411954)
chr5 (17-134)||(1164359-1164476)
chr5 (17-101)||(1849323-1849407)
chr5 (16-100)||(3298832-3298916)
chr5 (16-100)||(3391725-3391809)
chr5 (170-223)||(39874044-39874097)
chr5 (16-77)||(39168281-39168338)
[»] chr4 (1 HSPs)
chr4 (16-119)||(25912953-25913058)
[»] chr3 (1 HSPs)
chr3 (80-124)||(55345733-55345777)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 38987127 - 38986873
Alignment:
Q  16 tctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccacccttgctccatcttctccactttttgacc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38987127 tctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccacccttgctccatcttctccactttttgacc 38987028  T
Q  116 taatttctttgcaattgcagcaattgccg-aactcactttttattctatctatttatttatttatggtttagggccaaaattttcggttctaattgcggg 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||    
T  38987027 taatttctttgcaattgcagcaattgccgaaactcactttttattctatctatttatttatttatggtttagggccaaaattctcagttctaatcgcggg 38986928  T
Q  215 tttggcccatcatactctttatttattttttgagatttacttttccactcctatg 269  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38986927 tttggcccatcttactctttatttattttttgagatttacttttccactcctatg 38986873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 39725849 - 39725745
Alignment:
Q  16 tctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccacccttgctccatcttctccactttttgacc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39725849 tctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccacccttgctccatcttctccactttttgacc 39725750  T
Q  116 taatt 120  Q
    |||||    
T  39725749 taatt 39725745  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 39879249 - 39879125
Alignment:
Q  16 tctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaaca---gaacgccacc---cttgctccatcttctccacttt 109  Q
    |||||||||||||||||| |||||| || ||| ||||||||||||||||||| |||||||||   ||||||||||   ||| |||||||||||||||| |    
T  39879249 tctgctccaaatgaaagaaagtacgcagctgacaaacatgttgttgacgaacattcacaacaacagaacgccaccacccttcctccatcttctccactct 39879150  T
Q  110 ttgacctaatttctttgcaattgca 134  Q
    |||||||||||||||||||||||||    
T  39879149 ttgacctaatttctttgcaattgca 39879125  T

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Target: chr5; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 40411954 - 40411830
Alignment:
Q  16 tctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaaca---gaacgccacc---cttgctccatcttctccacttt 109  Q
    |||||||||||||||||| |||||| || ||| ||||||||||||||||||| |||||||||   ||||||||||   ||| |||||||||||||||| |    
T  40411954 tctgctccaaatgaaagaaagtacgcagctgacaaacatgttgttgacgaacattcacaacaacagaacgccaccacccttcctccatcttctccactct 40411855  T
Q  110 ttgacctaatttctttgcaattgca 134  Q
    |||||||||||||||||||||||||    
T  40411854 ttgacctaatttctttgcaattgca 40411830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 1164359 - 1164476
Alignment:
Q  17 ctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccacccttgctccatcttctccactttttgacct 116  Q
    ||||||||||||||| | |||||| |||| ||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||  |||||| ||||||    
T  1164359 ctgctccaaatgaaacaaagtacgcagttcagaaacatgttgttgacgaacattcacaacagcacgccatccttcctccatcttcgacactttctgacct 1164458  T
Q  117 aatttctttgcaattgca 134  Q
    ||||| ||| ||||||||    
T  1164459 aatttttttccaattgca 1164476  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 1849407 - 1849323
Alignment:
Q  17 ctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccacccttgctccatcttc 101  Q
    ||||||||||||||| | |||||| |||| ||||||||||||||||||||| |||||||||| ||   |||||| ||||||||||    
T  1849407 ctgctccaaatgaaacaaagtacgcagttcagaaacatgttgttgacgaacattcacaacagcacaaaacccttcctccatcttc 1849323  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 3298916 - 3298832
Alignment:
Q  16 tctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccacccttgctccatctt 100  Q
    |||||||||||||||| | |||||| |||||| ||||||||||||||||||| |||| ||||  |  |||||||| |||||||||    
T  3298916 tctgctccaaatgaaacaaagtacgtagttgacaaacatgttgttgacgaacattcaaaacaccaacccacccttcctccatctt 3298832  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 3391809 - 3391725
Alignment:
Q  16 tctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccacccttgctccatctt 100  Q
    |||||||||||||||| | |||||| |||||| ||||||||||||||||||| |||| ||||  |  |||||||| |||||||||    
T  3391809 tctgctccaaatgaaacaaagtacgtagttgacaaacatgttgttgacgaacattcaaaacaccaacccacccttcctccatctt 3391725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 39874097 - 39874044
Alignment:
Q  170 atttatttatggtttagggccaaaattttcggttctaattgcgggtttggccca 223  Q
    |||||||| | ||||||||||| ||||||| |||||||| ||||||||||||||    
T  39874097 atttatttgttgtttagggccagaattttcagttctaatcgcgggtttggccca 39874044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 39168338 - 39168281
Alignment:
Q  16 tctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaaca 77  Q
    |||||||||||||||||| ||||    | ||||||||||||||||||||||| |||||||||    
T  39168338 tctgctccaaatgaaagaaagta----gatgagaaacatgttgttgacgaaccttcacaaca 39168281  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 25912953 - 25913058
Alignment:
Q  16 tctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgac--gaactttcacaacagaacgccacccttgctccatcttctccactttttga 113  Q
    |||||||||||||||||| |||||| |||||| |||||||||||||||  |||| ||||||||||| |||||||||| ||||||||||| || |||||||    
T  25912953 tctgctccaaatgaaagaaagtacgcagttgacaaacatgttgttgacgagaacattcacaacagagcgccacccttcctccatcttcttcattttttga 25913052  T
Q  114 cctaat 119  Q
    ||||||    
T  25913053 cctaat 25913058  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 55345733 - 55345777
Alignment:
Q  80 acgccacccttgctccatcttctccactttttgacctaatttctt 124  Q
    ||||||||||| |||||| ||||||||| ||||||||||||||||    
T  55345733 acgccacccttcctccatattctccactctttgacctaatttctt 55345777  T

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