View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4097_low_25 (Length: 262)
Name: NF4097_low_25
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4097_low_25 |
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| [»] chr5 (8 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 1059167 - 1058913
Alignment:
| Q |
8 |
tagcaaaggggtattgaacttatttagtgaagagattccacactttgatgctacaacactggtttcttcattcaagaaaagggtagtcagtataacctat |
107 |
Q |
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| T |
1059167 |
tagcaaaggggtattgaacttatttagtgaagagattccacactttgatgctacaacactggtttcttcattcaagaaaagggtagtcagtataacctat |
1059068 |
T |
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| Q |
108 |
aactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcatcaagtgcaaatctcttcggcaaatctggattagctaagaacaaacga |
207 |
Q |
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| T |
1059067 |
aactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcattaagtgcaaatctcttcggcaaatctggattagctaagaacaaacga |
1058968 |
T |
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| Q |
208 |
ccatatacaacaaggtctgtcctattttcagctatggcattgatcccatcatttc |
262 |
Q |
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| T |
1058967 |
ccatatacaacaaggtctgtcctattttcagctatggcattgatcccatcatttc |
1058913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 1071981 - 1071735
Alignment:
| Q |
13 |
aaggggtattgaacttatttagtgaagagattccacactttgatgctacaacactggtttcttcattcaagaaaagggtagtcagtataacctataactg |
112 |
Q |
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| T |
1071981 |
aagggataatgaccttatttagtgaggagattccacacttggatgctacagcaccggttccttcattcaagaaaagggtagtcagtataacctagaactg |
1071882 |
T |
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| Q |
113 |
gatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcatcaagtgcaaatctcttcggcaaatctggattagctaagaacaaacgaccata |
212 |
Q |
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| T |
1071881 |
gatcagaaacgtaaaatgtctccctgttatacttgtttagaggagcatcaagtgcaaatctctttggcaaatctggattagctaagaacaaacgaccata |
1071782 |
T |
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| Q |
213 |
tacaacaaggtctgtcctattttcagctatggcattgatcccatcat |
259 |
Q |
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| T |
1071781 |
tacaactaggtctgccctgttttcagctatggcattgatcccatcat |
1071735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 1066254 - 1066008
Alignment:
| Q |
13 |
aaggggtattgaacttatttagtgaagagattccacactttgatgctacaacactggtttcttcattcaagaaaagggtagtcagtataacctataactg |
112 |
Q |
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||||| || |||||||||||||||| |||||||||||||| ||||||||| || |||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
1066254 |
aagggataatgaacttatttagtgaggagattccacacttggatgctacagcatcagtttcttcattcaagaaaggggtagtcagtataacctagaactg |
1066155 |
T |
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| Q |
113 |
gatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcatcaagtgcaaatctcttcggcaaatctggattagctaagaacaaacgaccata |
212 |
Q |
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|||| ||| ||||||| ||| |||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
1066154 |
gatcagaaatgtagaacgtctccctgttatatttgttcagaggagcatcaagtgcaaatctctttggtaaatctggattagctaagaacaaacgaccata |
1066055 |
T |
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| Q |
213 |
tacaacaaggtctgtcctattttcagctatggcattgatcccatcat |
259 |
Q |
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| T |
1066054 |
tacaacaaggtctgccctgttttcagctatggcattgatcccatcat |
1066008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 77 - 257
Target Start/End: Complemental strand, 1053833 - 1053653
Alignment:
| Q |
77 |
attcaagaaaagggtagtcagtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcatcaagtgcaaatctctt |
176 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||| |||||||||| ||||||||||||||| |
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| T |
1053833 |
attcaagagaagggtagtcagtataacctataactggatcagaagtgtagaatgtctccctattatacttgttaagaggagcattaagtgcaaatctctt |
1053734 |
T |
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| Q |
177 |
cggcaaatctggattagctaagaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatcccatc |
257 |
Q |
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| T |
1053733 |
tggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcagctatagcattgattccatc |
1053653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 59 - 257
Target Start/End: Complemental strand, 1034206 - 1034008
Alignment:
| Q |
59 |
tacaacactggtttcttcattcaagaaaagggtagtcagtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagc |
158 |
Q |
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||||||| || ||||||||||||||||| || ||||| |||||||||| ||| ||||| ||||||||||||||| |||||||||| || || |||||||| |
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| T |
1034206 |
tacaacattgttttcttcattcaagaaagggatagtccgtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttattgagaggagc |
1034107 |
T |
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| Q |
159 |
atcaagtgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatcccatc |
257 |
Q |
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| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||||| || ||||| |||||||||||||| |
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| T |
1034106 |
gtttagtgcaaatctcttcggcaaatctggattcgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcattgatcccatc |
1034008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 59 - 254
Target Start/End: Complemental strand, 1044593 - 1044398
Alignment:
| Q |
59 |
tacaacactggtttcttcattcaagaaaagggtagtcagtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagc |
158 |
Q |
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||||||| || ||||||||||||||||| || |||||||| ||||| | ||| ||||| ||| ||||||||||| |||| ||||||||||| |||||||| |
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| T |
1044593 |
tacaacattgttttcttcattcaagaaagggatagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctccctattatacttgttgagaggagc |
1044494 |
T |
|
| Q |
159 |
atcaagtgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatccc |
254 |
Q |
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|| ||||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||| |||| | | ||||||||||| |||| |||||| |
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| T |
1044493 |
attaagtgcaaatctctttggcaaatctggatttgctaagaacaaacgaccataaactacaagatctgccttgttttcagctatagcatcgatccc |
1044398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 69 - 254
Target Start/End: Complemental strand, 1047169 - 1046984
Alignment:
| Q |
69 |
gtttcttcattcaagaaaagggtagtcagtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcatcaagtgca |
168 |
Q |
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|||| |||||||||||||||||||||| |||||||| | ||||||||| |||||| |||||||| || | |||||||||||||| ||||||| ||||||| |
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| T |
1047169 |
gtttattcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagcattaagtgca |
1047070 |
T |
|
| Q |
169 |
aatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatccc |
254 |
Q |
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|||||||| ||||||||||||||||||| ||| ||||| | || ||||||| ||| ||||||||||||||| ||||||||||| |
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| T |
1047069 |
aatctctttggcaaatctggattagctatgaataaacggtcgtaagcaacaagatctaccctattttcagctatagcattgatccc |
1046984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 80 - 257
Target Start/End: Original strand, 1640371 - 1640548
Alignment:
| Q |
80 |
caagaaaagggtagtcagtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcatcaagtgcaaatctcttcgg |
179 |
Q |
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|||||||||||||||| |||||||| | ||| ||||| || ||||||||||| ||| |||||||||||| ||||||||||| || || |||||||| || |
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| T |
1640371 |
caagaaaagggtagtctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttgg |
1640470 |
T |
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| Q |
180 |
caaatctggattagctaagaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatcccatc |
257 |
Q |
| |
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||||||||||||| || ||||| |||||||| ||||||| |||||| |||||||| ||||||||| |||||||| |
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| T |
1640471 |
taaatctggattagatataaacaagcgaccataagcaacaagatctgtcttattttcaactatggcatcaatcccatc |
1640548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 248
Target Start/End: Complemental strand, 65937 - 65854
Alignment:
| Q |
165 |
tgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcatt |
248 |
Q |
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|||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||| |||| | ||||||| ||||| ||||| |
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| T |
65937 |
tgcaaatctctttggcaaatttggattagctaagaacgaacgaccataaacaacaagatctgccttattttctgctatagcatt |
65854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 12121338 - 12121399
Alignment:
| Q |
165 |
tgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtctg |
226 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
12121338 |
tgcaaatctcattggcaaatctggattagctaagaacaaacgaccataaacaacaagatctg |
12121399 |
T |
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Back To:
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