View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4097_low_26 (Length: 261)

Name: NF4097_low_26
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4097_low_26
NF4097_low_26
[»] chr7 (3 HSPs)
chr7 (1-96)||(31292234-31292329)
chr7 (142-242)||(31292095-31292192)
chr7 (165-225)||(39838333-39838393)
[»] chr1 (1 HSPs)
chr1 (20-53)||(15932192-15932225)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 31292329 - 31292234
Alignment:
Q  1 agtcagacatatgtcctacacaaaggtcattcaacgtcatcaacccaaggatcttacgtccaacaagatcatatacctaattaaaattgtttgtag 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31292329 agtcagacatatgtcctacacaaaggtcattcaacgtcatcaacccaaggatctcacgtccaacaagatcatatacctaattaaaattgtttgtag 31292234  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 31292192 - 31292095
Alignment:
Q  142 ggaaccacataacccattattatttgtgagtgtgaatgtgatgatcaaagaaacctttccaagtaacgaattatacacccataaaaatatttatggcttt 241  Q
    |||||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31292192 ggaaccacataacccattatt---tatgagtgtgaatgtgatgatcaaagaaacctttccaagtaacgaattatacacccataaaaatatttatggcttt 31292096  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 39838333 - 39838393
Alignment:
Q  165 ttgtgagtgtgaatgtgatgatcaaagaaacctttccaagtaacgaattatacacccataa 225  Q
    ||||||||||||||||||||||  ||||||||||||||||||| ||||||| | |||||||    
T  39838333 ttgtgagtgtgaatgtgatgattgaagaaacctttccaagtaaagaattattcccccataa 39838393  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 15932225 - 15932192
Alignment:
Q  20 acaaaggtcattcaacgtcatcaacccaaggatc 53  Q
    ||||||||||||||| ||||||||||||||||||    
T  15932225 acaaaggtcattcaatgtcatcaacccaaggatc 15932192  T

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