View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4097_low_30 (Length: 249)

Name: NF4097_low_30
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4097_low_30
NF4097_low_30
[»] chr7 (1 HSPs)
chr7 (19-102)||(17962857-17962940)
[»] chr5 (2 HSPs)
chr5 (19-102)||(815546-815629)
chr5 (19-102)||(28688395-28688478)
[»] scaffold0285 (1 HSPs)
scaffold0285 (20-72)||(14821-14873)


Alignment Details
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 17962857 - 17962940
Alignment:
Q  19 accatctgtgttcaccttaacccagttgaaaattggaggaaaccagataacttcaataactctaggggcatttggaggcttgat 102  Q
    |||||| |||||||||||||||||||  ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||    
T  17962857 accatcagtgttcaccttaacccagtcaaaaattggaggagtccagataacttcaataactctaggggcattaggaggcttgat 17962940  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 815546 - 815629
Alignment:
Q  19 accatctgtgttcaccttaacccagttgaaaattggaggaaaccagataacttcaataactctaggggcatttggaggcttgat 102  Q
    |||||| |||||||||||||||||||  ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||    
T  815546 accatcagtgttcaccttaacccagtcaaaaattggaggagtccagataacttcaataactctaggggcattaggaggcttgat 815629  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 28688395 - 28688478
Alignment:
Q  19 accatctgtgttcaccttaacccagttgaaaattggaggaaaccagataacttcaataactctaggggcatttggaggcttgat 102  Q
    |||||| |||||||||||||||||||  ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||    
T  28688395 accatcagtgttcaccttaacccagtcaaaaattggaggagtccagataacttcaataactctaggggcattaggaggcttgat 28688478  T

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Target: scaffold0285 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 14821 - 14873
Alignment:
Q  20 ccatctgtgttcaccttaacccagttgaaaattggaggaaaccagataacttc 72  Q
    ||||| ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  14821 ccatcagtgttcaccttaatccaattgaaaattggaggaaaccagataacttc 14873  T

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