View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4097_low_35 (Length: 237)

Name: NF4097_low_35
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4097_low_35
NF4097_low_35
[»] chr7 (5 HSPs)
chr7 (26-115)||(31290901-31290990)
chr7 (135-221)||(47190055-47190141)
chr7 (138-180)||(12165730-12165772)
chr7 (133-180)||(19465494-19465541)
chr7 (132-178)||(29830251-29830297)
[»] chr1 (4 HSPs)
chr1 (137-221)||(21264011-21264095)
chr1 (135-180)||(52382618-52382663)
chr1 (133-178)||(15382927-15382972)
chr1 (131-180)||(37619031-37619080)
[»] chr4 (7 HSPs)
chr4 (138-221)||(37793383-37793466)
chr4 (133-202)||(5915780-5915849)
chr4 (133-220)||(5812561-5812648)
chr4 (138-180)||(37775672-37775714)
chr4 (130-180)||(42062998-42063048)
chr4 (135-180)||(4922561-4922606)
chr4 (135-180)||(15530060-15530105)
[»] chr8 (3 HSPs)
chr8 (138-221)||(1835351-1835434)
chr8 (138-221)||(1879192-1879275)
chr8 (138-180)||(41362520-41362562)
[»] chr3 (10 HSPs)
chr3 (129-220)||(48155180-48155271)
chr3 (132-220)||(13006896-13006984)
chr3 (149-220)||(29895874-29895945)
chr3 (136-199)||(5124669-5124732)
chr3 (138-199)||(54606705-54606766)
chr3 (132-180)||(29702386-29702434)
chr3 (133-180)||(20108104-20108151)
chr3 (133-180)||(50646626-50646673)
chr3 (135-180)||(50359482-50359527)
chr3 (132-180)||(12945512-12945560)
[»] chr2 (6 HSPs)
chr2 (135-221)||(7553350-7553436)
chr2 (142-220)||(6348721-6348799)
chr2 (131-199)||(58018-58086)
chr2 (156-220)||(32651854-32651918)
chr2 (133-180)||(14102023-14102070)
chr2 (172-220)||(40913261-40913309)
[»] chr6 (3 HSPs)
chr6 (133-220)||(4488549-4488636)
chr6 (134-219)||(25440957-25441042)
chr6 (132-180)||(12945706-12945754)
[»] chr5 (6 HSPs)
chr5 (133-220)||(8777380-8777467)
chr5 (132-219)||(25513768-25513855)
chr5 (138-199)||(26411296-26411357)
chr5 (133-220)||(13887235-13887322)
chr5 (134-180)||(30628738-30628784)
chr5 (133-180)||(39885874-39885921)
[»] scaffold0685 (1 HSPs)
scaffold0685 (135-180)||(6631-6676)
[»] scaffold0312 (1 HSPs)
scaffold0312 (133-199)||(9119-9185)


Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 31290990 - 31290901
Alignment:
Q  26 ctctctcagtttcaagtttcaatttctaacacttcaaaaaccactttgaaaactgatcaaagaaccaatctttttcatttcttgagcaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290990 ctctctcagtttcaagtttcaatttctaacacttcaaaaaccactttgaaaactgatcaaagaaccaatctttttcatttcttgagcaaa 31290901  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 47190055 - 47190141
Alignment:
Q  135 gggaaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcataatgcagttgtgtgtttaatga 221  Q
    |||||||||||| |||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  47190055 gggaaattctactgtgaagttgttagaatgacttttttggtaaagttattagaatgaccaatcataatgcagttgtgtgtttaatga 47190141  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 12165730 - 12165772
Alignment:
Q  138 aaattctacggtgaagttgttaaaatgacttttttggtgaagt 180  Q
    ||||||||||||||||| ||||||||||||||| |||||||||    
T  12165730 aaattctacggtgaagtcgttaaaatgacttttctggtgaagt 12165772  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 19465541 - 19465494
Alignment:
Q  133 aagggaaattctacggtgaagttgttaaaatgacttttttggtgaagt 180  Q
    ||||||||||||| ||||||||||| |||||||||| || ||||||||    
T  19465541 aagggaaattctatggtgaagttgtcaaaatgacttcttcggtgaagt 19465494  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 29830251 - 29830297
Alignment:
Q  132 aaagggaaattctacggtgaagttgttaaaatgacttttttggtgaa 178  Q
    |||||||||||||| ||| |||||| |||||||||||||| ||||||    
T  29830251 aaagggaaattctatggttaagttgctaaaatgactttttcggtgaa 29830297  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 21264095 - 21264011
Alignment:
Q  137 gaaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcataatgcagttgtgtgtttaatga 221  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21264095 gaaattctatggtgaagttgttataaagacttttttggtgaagtcattagaatgaccaatcataatgcagttgtgtgtttaatga 21264011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 52382618 - 52382663
Alignment:
Q  135 gggaaattctacggtgaagttgttaaaatgacttttttggtgaagt 180  Q
    ||||||||||| |||||||||||||||||||||| || ||||||||    
T  52382618 gggaaattctatggtgaagttgttaaaatgacttcttcggtgaagt 52382663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 15382927 - 15382972
Alignment:
Q  133 aagggaaattctacggtgaagttgttaaaatgacttttttggtgaa 178  Q
    |||| |||||||| ||||||||| | ||||||||||||||||||||    
T  15382927 aaggaaaattctatggtgaagttataaaaatgacttttttggtgaa 15382972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 37619080 - 37619031
Alignment:
Q  131 aaaagggaaattctacggtgaagttgttaaaatgacttttttggtgaagt 180  Q
    |||||| |||||||| ||||||||| | | ||||||||||||||||||||    
T  37619080 aaaaggaaaattctatggtgaagttataagaatgacttttttggtgaagt 37619031  T

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Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 37793383 - 37793466
Alignment:
Q  138 aaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcataatgcagttgtgtgtttaatga 221  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37793383 aaattctactgtgaagttgttagaatgacttttttggtgaagtcattagaatgatcaatcataatgcagttgtgtgtttaatga 37793466  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 5915849 - 5915780
Alignment:
Q  133 aagggaaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcataat 202  Q
    ||||||||||||| |||||||| |||||||||| |||| |||||||||||||||||||| ||||||||||    
T  5915849 aagggaaattctatggtgaagtcgttaaaatgatttttctggtgaagtcattagaatgatcaatcataat 5915780  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 5812561 - 5812648
Alignment:
Q  133 aagggaaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcataatgcagttgtgtgtttaatg 220  Q
    |||| ||| |||| ||||||||||||| ||    ||||||| ||||||||||||||||| ||||||||||||| |||||| |||||||    
T  5812561 aaggaaaaatctatggtgaagttgttagaaatttttttttgctgaagtcattagaatgatcaatcataatgcatttgtgtatttaatg 5812648  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 37775672 - 37775714
Alignment:
Q  138 aaattctacggtgaagttgttaaaatgacttttttggtgaagt 180  Q
    |||||||||||||||||  ||||||||| ||||||||||||||    
T  37775672 aaattctacggtgaagtcattaaaatgatttttttggtgaagt 37775714  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 42062998 - 42063048
Alignment:
Q  130 taaaagggaaattctacggtgaagttgttaaaatgacttttttggtgaagt 180  Q
    |||||||||||||||| ||||||||  || || ||||||||||||||||||    
T  42062998 taaaagggaaattctatggtgaagtcattcaattgacttttttggtgaagt 42063048  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 4922606 - 4922561
Alignment:
Q  135 gggaaattctacggtgaagttgttaaaatgacttttttggtgaagt 180  Q
    ||||||||||| ||||||||||| |||||||||| || ||||||||    
T  4922606 gggaaattctatggtgaagttgtcaaaatgacttcttcggtgaagt 4922561  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 15530060 - 15530105
Alignment:
Q  135 gggaaattctacggtgaagttgttaaaatgacttttttggtgaagt 180  Q
    ||||||||||| |||||||||||| || ||||||||| ||||||||    
T  15530060 gggaaattctatggtgaagttgttcaattgactttttcggtgaagt 15530105  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 1835434 - 1835351
Alignment:
Q  138 aaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcataatgcagttgtgtgtttaatga 221  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  1835434 aaattctatggtgaagttgttagaatgacttttttggtgaagtcattagaatgaccaatcataatgcatttgtgtatttaatga 1835351  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 1879275 - 1879192
Alignment:
Q  138 aaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcataatgcagttgtgtgtttaatga 221  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  1879275 aaattctatggtgaagttgttagaatgacttttttggtgaagtcattagaatgaccaatcataatgcatttgtgtatttaatga 1879192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 41362520 - 41362562
Alignment:
Q  138 aaattctacggtgaagttgttaaaatgacttttttggtgaagt 180  Q
    |||||||| ||||||||| | ||||||||||||||||||||||    
T  41362520 aaattctatggtgaagttatgaaaatgacttttttggtgaagt 41362562  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 48155271 - 48155180
Alignment:
Q  129 ataaaagggaaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcataatgcagttgtgtgtttaatg 220  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||  ||||| |||||||    
T  48155271 ataaaagggaaattctacggtgaagtcgttaaaatgacttttttggtgaagtcattagaatgaccgatcataatacatctgtgtatttaatg 48155180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 13006896 - 13006984
Alignment:
Q  132 aaagggaaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcataatgcagttgtgtgtttaatg 220  Q
    ||||||||||| || |||||||| ||||||||||||||||| ||||||| |||||| |||||||||||||| || |||||| |||||||    
T  13006896 aaagggaaattatatggtgaagtcgttaaaatgacttttttagtgaagttattagattgaccaatcataattcatttgtgtatttaatg 13006984  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 29895874 - 29895945
Alignment:
Q  149 tgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcataatgcagttgtgtgtttaatg 220  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||  ||||| |||||||    
T  29895874 tgaagttgttagaatgacttttttggtgaagttattagaatgaccaatcataatacatctgtgtatttaatg 29895945  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 5124669 - 5124732
Alignment:
Q  136 ggaaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcat 199  Q
    |||||||||| |||||| |  ||||||||||||||||||||||||||||||| |||||||||||    
T  5124669 ggaaattctatggtgaaatcattaaaatgacttttttggtgaagtcattagattgaccaatcat 5124732  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 54606705 - 54606766
Alignment:
Q  138 aaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcat 199  Q
    |||||||| ||| || || ||||||||||||||||| ||||||||||||| |||||||||||    
T  54606705 aaattctatggtaaaattattaaaatgacttttttgttgaagtcattagattgaccaatcat 54606766  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 29702386 - 29702434
Alignment:
Q  132 aaagggaaattctacggtgaagttgttaaaatgacttttttggtgaagt 180  Q
    |||||||||||||| |||||||||||| || ||||||||| ||||||||    
T  29702386 aaagggaaattctatggtgaagttgttcaattgactttttcggtgaagt 29702434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 20108151 - 20108104
Alignment:
Q  133 aagggaaattctacggtgaagttgttaaaatgacttttttggtgaagt 180  Q
    ||||||||||||| ||||||||| || || ||||||||||||||||||    
T  20108151 aagggaaattctatggtgaagttattcaattgacttttttggtgaagt 20108104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 50646626 - 50646673
Alignment:
Q  133 aagggaaattctacggtgaagttgttaaaatgacttttttggtgaagt 180  Q
    ||||||||||||| ||||||||||| |||||||||| || ||||||||    
T  50646626 aagggaaattctatggtgaagttgtcaaaatgacttcttcggtgaagt 50646673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 50359482 - 50359527
Alignment:
Q  135 gggaaattctacggtgaagttgttaaaatgacttttttggtgaagt 180  Q
    ||||||||||| ||||||||||| |||||||||| || ||||||||    
T  50359482 gggaaattctatggtgaagttgtcaaaatgacttcttcggtgaagt 50359527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 12945560 - 12945512
Alignment:
Q  132 aaagggaaattctacggtgaagttgttaaaatgacttttttggtgaagt 180  Q
    |||||||||||||| |||||||||||| || ||||||||| | ||||||    
T  12945560 aaagggaaattctatggtgaagttgttcaattgactttttcgatgaagt 12945512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 7553350 - 7553436
Alignment:
Q  135 gggaaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcataatgcagttgtgtgtttaatga 221  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||| ||||||||    
T  7553350 gggaaattctatggtgaagttgttaaaatgacttttttggtaaagtcattagaatgaccaatcataatacatttgtgtatttaatga 7553436  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 6348721 - 6348799
Alignment:
Q  142 tctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcataatgcagttgtgtgtttaatg 220  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||    
T  6348721 tctatggtgaagttgttaaaatgacttttttgatgaagtcattagaatgaccaatcataatgcatttgtgtatttaatg 6348799  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 58018 - 58086
Alignment:
Q  131 aaaagggaaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcat 199  Q
    |||| |||||||||| |||||| || | | ||||||||||||| ||||||||| |||||||||||||||    
T  58018 aaaatggaaattctatggtgaaattatgagaatgacttttttgatgaagtcatgagaatgaccaatcat 58086  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 32651854 - 32651918
Alignment:
Q  156 gttaaaatgacttttttggtgaagtcattagaatgaccaatcataatgcagttgtgtgtttaatg 220  Q
    |||||||| |||||| |||||||||||||||||||| |||||||||| ||  ||||| |||||||    
T  32651854 gttaaaataacttttctggtgaagtcattagaatgatcaatcataatacatctgtgtatttaatg 32651918  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 14102070 - 14102023
Alignment:
Q  133 aagggaaattctacggtgaagttgttaaaatgacttttttggtgaagt 180  Q
    ||||||||||||| ||||||||||| |||||||||| || ||||||||    
T  14102070 aagggaaattctatggtgaagttgtcaaaatgacttcttcggtgaagt 14102023  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 40913309 - 40913261
Alignment:
Q  172 tggtgaagtcattagaatgaccaatcataatgcagttgtgtgtttaatg 220  Q
    |||||||||| ||| |||||||||||||||| || |||||| |||||||    
T  40913309 tggtgaagtcgttaaaatgaccaatcataattcatttgtgtatttaatg 40913261  T

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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 4488636 - 4488549
Alignment:
Q  133 aagggaaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcataatgcagttgtgtgtttaatg 220  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||  ||||| |||||||    
T  4488636 aagggaaattctacggtgaagtcgttaaaatgacttttttggtgaagtcattagaatgaccgatcataatacatctgtgtatttaatg 4488549  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 25440957 - 25441042
Alignment:
Q  134 agggaaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcataatgcagttgtgtgtttaat 219  Q
    |||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| |||||| ||||| ||  ||||| ||||||    
T  25440957 agggaaattctatggtgaagtcgttaaaatgacttttctggtgaagtcattagaattaccaattataatacatctgtgtatttaat 25441042  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 12945754 - 12945706
Alignment:
Q  132 aaagggaaattctacggtgaagttgttaaaatgacttttttggtgaagt 180  Q
    |||||||||||||| ||||||||||  ||||||||||||| ||||||||    
T  12945754 aaagggaaattctatggtgaagttgccaaaatgactttttcggtgaagt 12945706  T

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Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 8777467 - 8777380
Alignment:
Q  133 aagggaaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcataatgcagttgtgtgtttaatg 220  Q
    |||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||| || |||||| |||||||    
T  8777467 aagggaaattctacggtgaagtcgctaaaatgacttttttggtaaagtcattagaatgaccaatcataatacatttgtgtatttaatg 8777380  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 25513768 - 25513855
Alignment:
Q  132 aaagggaaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcataatgcagttgtgtgtttaat 219  Q
    ||||| |||||||| |||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| |||||| ||||||    
T  25513768 aaaggaaaattctatggtgaagtcgttaaaatgatttttctggtgaagtcattagaatgaccaatcataatgcatttgtgtatttaat 25513855  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 26411296 - 26411357
Alignment:
Q  138 aaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcat 199  Q
    |||||||| ||||||||  ||| ||||| |||||||||||||||||||||||||||||||||    
T  26411296 aaattctatggtgaagtcattagaatgatttttttggtgaagtcattagaatgaccaatcat 26411357  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 13887235 - 13887322
Alignment:
Q  133 aagggaaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcataatgcagttgtgtgtttaatg 220  Q
    |||||||||| || |||||||| |||||||||| |||| ||||||||| |||| | ||||||||||||||  | |||||| |||||||    
T  13887235 aagggaaattttatggtgaagtcgttaaaatgatttttctggtgaagtgattaaattgaccaatcataatttatttgtgtatttaatg 13887322  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 30628784 - 30628738
Alignment:
Q  134 agggaaattctacggtgaagttgttaaaatgacttttttggtgaagt 180  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  30628784 agggaaattctacggtgaagttgtcaaaatgactttttcggtgaagt 30628738  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 39885921 - 39885874
Alignment:
Q  133 aagggaaattctacggtgaagttgttaaaatgacttttttggtgaagt 180  Q
    ||||||||||||| |||||||||||| || ||||||||| ||||||||    
T  39885921 aagggaaattctatggtgaagttgttcaattgactttttcggtgaagt 39885874  T

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Target: scaffold0685 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 6631 - 6676
Alignment:
Q  135 gggaaattctacggtgaagttgttaaaatgacttttttggtgaagt 180  Q
    ||||||||||| |||||||||||||||||||||| || ||||||||    
T  6631 gggaaattctatggtgaagttgttaaaatgacttcttcggtgaagt 6676  T

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Target: scaffold0312 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 9185 - 9119
Alignment:
Q  133 aagggaaattctacggtgaagttgttaaaatgacttttttggtgaagtcattagaatgaccaatcat 199  Q
    |||| |||||||| | ||||||| | | ||||||||||||| ||||||||| ||||||| |||||||    
T  9185 aaggaaaattctatgatgaagttatgagaatgacttttttgctgaagtcatgagaatgatcaatcat 9119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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