View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4097_low_36 (Length: 237)

Name: NF4097_low_36
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4097_low_36
NF4097_low_36
[»] chr5 (2 HSPs)
chr5 (1-228)||(8051940-8052167)
chr5 (7-228)||(8060139-8060357)
[»] chr3 (1 HSPs)
chr3 (7-228)||(47547377-47547595)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 8051940 - 8052167
Alignment:
Q  1 gatgaaaatgggtttgtgttaagttttgatgagaagcatagagataaagtaatggaaaagtatattccacatgttttaagcacttatgaagctataaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8051940 gatgaaaatgggtttgtgttaagttttgatgagaagcatagagataaagtaatggaaaagtatattccacatgttttaagcacttatgaagctataaaag 8052039  T
Q  101 caggaaataaaactcttaagattcattcaatgcaatctggaccatggaaacaaagcgatttaacacatcctgcttcatttgattcacttgctatggatcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8052040 caggaaataaaactcttaagattcattcaatgcaatctggaccatggaaacaaagtgatttaacacatcctgcttcatttgattcacttgctatggatcc 8052139  T
Q  201 tgatctaaaaaattctataattgatgat 228  Q
    ||||||||||||||||||||||||||||    
T  8052140 tgatctaaaaaattctataattgatgat 8052167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 8060139 - 8060357
Alignment:
Q  7 aatgggtttgtgttaagttttgatgagaagcatagagataaagtaatggaaaagtatattccacatgttttaagcacttatgaagctataaaagcaggaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||  ||||||  |    
T  8060139 aatgggtttgtgttaagttttgatgagaagcatagagataaagtaatggagaagtatattccacatgttttaagcccttatgaagctatgcaagcagata 8060238  T
Q  107 ataaaactcttaagattcattcaatgcaatctggaccatggaaacaaagcgatttaacacatcctgcttcatttgattcacttgctatggatcctgatct 206  Q
    ||| |||||| ||||| |||||| |||||   ||  | |||  ||||||   ||| |  ||||| ||||||||||||||| ||||| ||||||||||| |    
T  8060239 atagaactctcaagatccattcattgcaa---ggtgcttggctacaaagtagttttaatcatccagcttcatttgattcaattgctttggatcctgattt 8060335  T
Q  207 aaaaaattctataattgatgat 228  Q
    ||| ||  ||||||||||||||    
T  8060336 aaagaaagctataattgatgat 8060357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 47547595 - 47547377
Alignment:
Q  7 aatgggtttgtgttaagttttgatgagaagcatagagataaagtaatggaaaagtatattccacatgttttaagcacttatgaagctataaaagcaggaa 106  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||  ||||||  |    
T  47547595 aatgggtttgtgttaagttttgatgagaagcatagatataaagtgatggagaagtatattccacatgttttaagcacttatgaagctatgcaagcagata 47547496  T
Q  107 ataaaactcttaagattcattcaatgcaatctggaccatggaaacaaagcgatttaacacatcctgcttcatttgattcacttgctatggatcctgatct 206  Q
    ||| |||||| ||||| |||||| |||||   ||  | |||   |||||   ||| |  ||||| ||||||||||||||| ||||| ||||||||||| |    
T  47547495 atagaactctcaagatccattcattgcaa---ggtgcttggcttcaaagtagttttaatcatccagcttcatttgattcaattgctttggatcctgattt 47547399  T
Q  207 aaaaaattctataattgatgat 228  Q
    ||| ||  ||||||||||||||    
T  47547398 aaagaaagctataattgatgat 47547377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University