View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4097_low_4 (Length: 567)

Name: NF4097_low_4
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4097_low_4
NF4097_low_4
[»] chr6 (17 HSPs)
chr6 (7-549)||(31284615-31285157)
chr6 (13-504)||(26729345-26729840)
chr6 (13-504)||(26623367-26623863)
chr6 (502-541)||(26623314-26623353)
chr6 (502-541)||(26729292-26729331)
chr6 (454-530)||(26623636-26623712)
chr6 (454-530)||(26729613-26729689)
chr6 (288-341)||(26647031-26647084)
chr6 (288-341)||(26752999-26753052)
chr6 (304-341)||(26802998-26803035)
chr6 (307-341)||(27610716-27610750)
chr6 (304-341)||(25539095-25539132)
chr6 (288-341)||(27592598-27592651)
chr6 (288-341)||(27604281-27604334)
chr6 (288-341)||(27677197-27677250)
chr6 (288-341)||(27679502-27679555)
chr6 (288-341)||(27705981-27706034)
[»] chr4 (3 HSPs)
chr4 (304-340)||(18679149-18679185)
chr4 (304-340)||(18723674-18723710)
chr4 (304-340)||(18731093-18731129)


Alignment Details
Target: chr6 (Bit Score: 502; Significance: 0; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 7 - 549
Target Start/End: Complemental strand, 31285157 - 31284615
Alignment:
Q  7 tccaagaaaatcatattcatatctgttcatgttcaactagatatgttagtccaaacaacaacatgacaatcacattcatgtattgataattatattataa 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31285157 tccaataaaatcatattcatatctgttcatgttcaactagatatgttagtccaaacaacaacatgacaatcacattcatgtattgataattatattataa 31285058  T
Q  107 aattttcattgttttgagttataaaaaactaattctagtttaagaatatataaattgtggttcccatttaagctttaagattgaatgatttaggtacata 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31285057 aattttcattgttttgagttataaaaaactaattctagtttaagaatatataaattgtggttcccatttaagctttaagattgaatgatttaggtacata 31284958  T
Q  207 aattaaaggcaaaacaagattaaagggaagtagagtacctctgactacaatcacttgacaagtctggtgtctgattaaaagctatcttcccagcaagctt 306  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31284957 aattaaaggcaaaacaagattcaagggaagtagagtacctctgactacaatcacttgacaagtctggtgtctgattaaaagctatcttcccagtaagctt 31284858  T
Q  307 gtattcatatctattcatgcccaacaagataagttggtgaacaaatnnnnnnncaatcacatctatatcttgacgaatatatcatacaattctaattgtt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  31284857 gtattcatatctattcatgcccaacaagataagttggtgaacaaataaaaaaacaatcacatctatatcttgacgaatatatcatacaattctaattgtt 31284758  T
Q  407 ttgacatacaataactagtatttgtttaaatatataaataaaaaatgtttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaagg 506  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284757 ttgacatacaataactaatatttgtttaaatatataaataaaaaatgtttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaagg 31284658  T
Q  507 caaaacaagattgaagtgaagtaggctacccaggagaacgatg 549  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  31284657 caaaacaagattgaagtgaagaaggctacccaggagaacgatg 31284615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 504
Target Start/End: Complemental strand, 26729840 - 26729345
Alignment:
Q  13 aaaatcatattcatatctgttcatgttcaactagatatgttagtccaaacaacaacatgacaatcacattcatgtattgataattatattataaaatttt 112  Q
    |||||||||||||||||||||||||| || ||||||||||||||  ||||| |||||||||||| ||||||||||||| ||||||||||||| |||||||    
T  26729840 aaaatcatattcatatctgttcatgtccagctagatatgttagtagaaacatcaacatgacaataacattcatgtattaataattatattat-aaatttt 26729742  T
Q  113 cattgttttgagttat-aaaaaactaattctagtttaagaatatataaattgtggttcccatttaagctttaagattgaatgatttaggtacataaatta 211  Q
     ||||  ||||||||| |||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| | ||||| ||    
T  26729741 aattg--ttgagttataaaaaaactaattttagtttaagaatatataaattgtttttcccatttaagctttaagattgaatgatttaggaatataaaata 26729644  T
Q  212 ---aaggcaaaacaagattaaagggaagtagagtacctctgactacaa---tcacttgacaagtctggtgtctgattaaaagctatcttcccagcaagct 305  Q
       |||||||||||||||| ||| |||||||||||||  |||||||||   || |||||| |||| |||||||| | || || |||||||| || |||||    
T  26729643 aagaaggcaaaacaagattcaagtgaagtagagtacccttgactacaatggtcgcttgacgagtccggtgtctggtcaagagttatcttcctagtaagct 26729544  T
Q  306 tgtattcatatctattcatgcccaacaagataagttggtgaacaaatnnnnnnncaatcacatctatatcttgacgaatatatcatacaattctaattgt 405  Q
    |||||||||||||||| ||| ||||||||||   ||| || ||||||        |||||||| |||||||| || | ||| |||||||||||||| |||    
T  26729543 tgtattcatatctattaatg-ccaacaagat---ttgttgcacaaataaaaaaataatcacatttatatcttaacaattatgtcatacaattctaaatgt 26729448  T
Q  406 tttgacatac-aataactagtatttgtttaaatatataaataaaaaa---tgtttcccttttaagcatttatatggaatgattgaggaataaaaattgaa 501  Q
    ||||| |||| |||| ||| |||||||||||||||||||| ||||||   ||||||||||||||||||| |||||||||||||| ||||||| |||||||    
T  26729447 tttgatatacaaatacctaatatttgtttaaatatataaacaaaaaattgtgtttcccttttaagcattaatatggaatgattggggaataagaattgaa 26729348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 504
Target Start/End: Complemental strand, 26623863 - 26623367
Alignment:
Q  13 aaaatcatattcatatctgttcatgttcaactagatatgttagtccaaacaacaacatgacaatcacattcatgtattgataattatattataaaatttt 112  Q
    |||||||||||||||||||||||||| || ||||||||||||||  ||||| |||||||||||| ||||||||||||| ||||||||||||| |||||||    
T  26623863 aaaatcatattcatatctgttcatgtccagctagatatgttagtagaaacatcaacatgacaataacattcatgtattaataattatattat-aaatttt 26623765  T
Q  113 cattgttttgagttat-aaaaaactaattctagtttaagaatatataaattgtggttcccatttaagctttaagattgaatgatttaggtacataaatta 211  Q
     ||||  ||||||||| |||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| | ||||| ||    
T  26623764 aattg--ttgagttataaaaaaactaattttagtttaagaatatataaattgtttttcccatttaagctttaagattgaatgatttaggaatataaaata 26623667  T
Q  212 ---aaggcaaaacaagattaaagggaagtagagtacctctgactacaa---tcacttgacaagtctggtgtctgattaaaagctatcttcccagcaagct 305  Q
       |||||||||||||||| ||| |||||||||||||  |||||||||   || |||||| |||| |||||||| | || || |||||||| || |||||    
T  26623666 aagaaggcaaaacaagattcaagtgaagtagagtacccttgactacaatggtcgcttgacgagtccggtgtctggtcaagagttatcttcctagtaagct 26623567  T
Q  306 tgtattcatatctattcatgcccaacaagataagttggtgaacaaat-nnnnnnncaatcacatctatatcttgacgaatatatcatacaattctaattg 404  Q
    |||||||||||||||| ||| ||||||||||   ||| || ||||||         |||||||| |||||||| || | ||| |||||||||||||| ||    
T  26623566 tgtattcatatctattaatg-ccaacaagat---ttgttgcacaaataaaaaaaataatcacatttatatcttaacaattatgtcatacaattctaaatg 26623471  T
Q  405 ttttgacatac-aataactagtatttgtttaaatatataaataaaaaa---tgtttcccttttaagcatttatatggaatgattgaggaataaaaattga 500  Q
    |||||| |||| |||| ||| |||||||||||||||||||| ||||||   ||||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  26623470 ttttgatatacaaatacctaatatttgtttaaatatataaacaaaaaattgtgtttcccttttaagcattaatatggaatgattggggaataagaattga 26623371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 502 - 541
Target Start/End: Complemental strand, 26623353 - 26623314
Alignment:
Q  502 gaaggcaaaacaagattgaagtgaagtaggctacccagga 541  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26623353 gaaggcaaaacaagattgaagtgaagtaggctacccagga 26623314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 502 - 541
Target Start/End: Complemental strand, 26729331 - 26729292
Alignment:
Q  502 gaaggcaaaacaagattgaagtgaagtaggctacccagga 541  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26729331 gaaggcaaaacaagattgaagtgaagtaggctacccagga 26729292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 530
Target Start/End: Complemental strand, 26623712 - 26623636
Alignment:
Q  454 tttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtag 530  Q
    |||||| ||||||| || | || |||||||| ||||||| ||| | ||||||||||||||||||| |||||||||||    
T  26623712 tttcccatttaagctttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtag 26623636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 530
Target Start/End: Complemental strand, 26729689 - 26729613
Alignment:
Q  454 tttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtag 530  Q
    |||||| ||||||| || | || |||||||| ||||||| ||| | ||||||||||||||||||| |||||||||||    
T  26729689 tttcccatttaagctttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtag 26729613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 26647084 - 26647031
Alignment:
Q  288 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 341  Q
    |||||||||||  || |||||||||||||||||||||| || ||||||||||||    
T  26647084 ctatcttcccaataaacttgtattcatatctattcatgtcccacaagataagtt 26647031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 26753052 - 26752999
Alignment:
Q  288 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 341  Q
    |||||||||||  || |||||||||||||||||||||| || ||||||||||||    
T  26753052 ctatcttcccaataaacttgtattcatatctattcatgtcccacaagataagtt 26752999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 304 - 341
Target Start/End: Complemental strand, 26803035 - 26802998
Alignment:
Q  304 cttgtattcatatctattcatgcccaacaagataagtt 341  Q
    |||||||||||||||||||||| |||||||||||||||    
T  26803035 cttgtattcatatctattcatgtccaacaagataagtt 26802998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 341
Target Start/End: Original strand, 27610716 - 27610750
Alignment:
Q  307 gtattcatatctattcatgcccaacaagataagtt 341  Q
    |||||||||||||||||||||||| ||||||||||    
T  27610716 gtattcatatctattcatgcccaataagataagtt 27610750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 341
Target Start/End: Complemental strand, 25539132 - 25539095
Alignment:
Q  304 cttgtattcatatctattcatgcccaacaagataagtt 341  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  25539132 cttgtattcatatctattcatgtccaataagataagtt 25539095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 27592598 - 27592651
Alignment:
Q  288 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 341  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27592598 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27592651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 27604281 - 27604334
Alignment:
Q  288 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 341  Q
    ||||||| |||  ||||| ||||||||||||||||||| |||| ||||||||||    
T  27604281 ctatctttccaataagctcgtattcatatctattcatgtccaataagataagtt 27604334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 27677197 - 27677250
Alignment:
Q  288 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 341  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27677197 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27677250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 27679555 - 27679502
Alignment:
Q  288 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 341  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27679555 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27679502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 27705981 - 27706034
Alignment:
Q  288 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 341  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27705981 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27706034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 18679149 - 18679185
Alignment:
Q  304 cttgtattcatatctattcatgcccaacaagataagt 340  Q
    |||||||||||||||||||||| |||| |||||||||    
T  18679149 cttgtattcatatctattcatgtccaataagataagt 18679185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 18723674 - 18723710
Alignment:
Q  304 cttgtattcatatctattcatgcccaacaagataagt 340  Q
    |||||||||||||||||||||| |||| |||||||||    
T  18723674 cttgtattcatatctattcatgtccaataagataagt 18723710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 18731093 - 18731129
Alignment:
Q  304 cttgtattcatatctattcatgcccaacaagataagt 340  Q
    |||||||||||||||||||||| |||| |||||||||    
T  18731093 cttgtattcatatctattcatgtccaataagataagt 18731129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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