View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4097_low_41 (Length: 224)

Name: NF4097_low_41
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4097_low_41
NF4097_low_41
[»] chr5 (2 HSPs)
chr5 (1-136)||(34714346-34714481)
chr5 (192-224)||(34714252-34714284)
[»] chr2 (1 HSPs)
chr2 (30-105)||(11615730-11615805)
[»] chr8 (1 HSPs)
chr8 (34-94)||(11806433-11806493)
[»] chr3 (2 HSPs)
chr3 (38-97)||(23270866-23270925)
chr3 (30-105)||(28978994-28979069)
[»] chr7 (1 HSPs)
chr7 (27-91)||(33730138-33730202)
[»] chr1 (1 HSPs)
chr1 (30-94)||(11199928-11199992)


Alignment Details
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 34714481 - 34714346
Alignment:
Q  1 ccaaaatattaaagaattgggtaatgtgggtcatctctcttctataaccaatattttacctattcatatatgatgtgggacttaaccactcacatttgat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||| |     
T  34714481 ccaaaatattaaagaattgggtaatgtgggtcatctctcttctatatccaatattttacccattcatatgtgatgtgggacttaaccactcacattttaa 34714382  T
Q  101 acccagcaatacatgtgtagttgttttacacattgg 136  Q
    ||||| | ||||||||||||||||||||||||||||    
T  34714381 acccaactatacatgtgtagttgttttacacattgg 34714346  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 34714284 - 34714252
Alignment:
Q  192 gagtggggtcctataaccgggcctgagtgcaac 224  Q
    |||||||||||||||||||||||||||||||||    
T  34714284 gagtggggtcctataaccgggcctgagtgcaac 34714252  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 11615805 - 11615730
Alignment:
Q  30 gtcatctctcttctataaccaatattttacctattcatatatgatgtgggacttaaccactcacatttgataccca 105  Q
    ||||||||| || |||| |||| |||||| || ||||||  ||||||| ||||||||||||||||||||| |||||    
T  11615805 gtcatctcttttatatatccaacattttatctgttcataagtgatgtgagacttaaccactcacatttgaaaccca 11615730  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 11806493 - 11806433
Alignment:
Q  34 tctctcttctataaccaatattttacctattcatatatgatgtgggacttaaccactcaca 94  Q
    |||||||| |||| ||||||||||||  |||||||||  ||||||||||||| ||||||||    
T  11806493 tctctcttatatatccaatattttacacattcatatacaatgtgggacttaatcactcaca 11806433  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 23270866 - 23270925
Alignment:
Q  38 tcttctataaccaatattttacctattcatatatgatgtgggacttaaccactcacattt 97  Q
    |||| |||| ||||||||||||  ||||||| |  |||||||||||||||||||||||||    
T  23270866 tcttgtatatccaatattttacacattcataaacaatgtgggacttaaccactcacattt 23270925  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 28979069 - 28978994
Alignment:
Q  30 gtcatctctcttctataaccaatattttacctattcatatatgatgtgggacttaaccactcacatttgataccca 105  Q
    |||| ||||||| |||| ||||||||||||  ||||||| ||  |||| |||||||||||||||| |||| |||||    
T  28979069 gtcacctctcttatatatccaatattttacacattcataaatagtgtgagacttaaccactcacacttgaaaccca 28978994  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 33730138 - 33730202
Alignment:
Q  27 tgggtcatctctcttctataaccaatattttacctattcatatatgatgtgggacttaaccactc 91  Q
    ||||||| ||||||| |||| |||| |||| ||| |||||||   ||||||||||||||||||||    
T  33730138 tgggtcacctctcttttatatccaacatttaacccattcatagtcgatgtgggacttaaccactc 33730202  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 11199992 - 11199928
Alignment:
Q  30 gtcatctctcttctataaccaatattttacctattcatatatgatgtgggacttaaccactcaca 94  Q
    |||| ||||||| |||| |||| ||||||||||||||||    ||||| ||||||||||||||||    
T  11199992 gtcacctctcttatatatccaacattttacctattcataggcaatgtgagacttaaccactcaca 11199928  T

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