View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4097_low_7 (Length: 445)
Name: NF4097_low_7
Description: NF4097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4097_low_7 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 34319920 - 34320334
Alignment:
| Q |
18 |
atataccagtgagcataaattatattgtactagtgagaatattaatcagttgtagagccaatcaaataccat--ggaaattgaattactttctagagaaa |
115 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
34319920 |
atataccagtgagcataaatt-----gtactagtgagaatattaatcagttgttgagccaatcaaataccatatggaaattgaattaatttctagagaaa |
34320014 |
T |
|
| Q |
116 |
ccatcaaaccttcatcaccaactcctactcacctcagaatttttccactttctttcattgataacannnnnnnncgtttatatgttccagtcattttctt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34320015 |
ccatcaaaccttcatcaccaactcctactcacctcagaatttatccactttctttcattgataacattttttttcgtttatatgttccagtcattttctt |
34320114 |
T |
|
| Q |
216 |
ttacaatccaaatgagggtagtgaccaaaattccaatgtatcactacttcgaaaatctttatctcaacttttatctaaatactacccttttgctggcaga |
315 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34320115 |
ttacaatccaaatgagtgtagtgaccaaaattccaaagtatcactacttcgaaaatctttatctcaacttttatctaaatactacccttttgctggcaga |
34320214 |
T |
|
| Q |
316 |
ttaaaagataaaattaccattgaatgtaatgatcaaggtgtgtcatttttggtcacaaagatcaaaaacaaactttcagagattctcaaaaaccccacag |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34320215 |
ttaaaagataaaattaccattgaatgtaatgatcaaggtgtgtcatttttggtcacaaagatcaaaaacaaactttcagagattctcaaaaaccccacag |
34320314 |
T |
|
| Q |
416 |
ataaaatattgaaccctttg |
435 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
34320315 |
ataaaatattgaaccctttg |
34320334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 84 - 435
Target Start/End: Original strand, 34328891 - 34329242
Alignment:
| Q |
84 |
taccatggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttttccactttctttcattgataacann |
183 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| | |||||||||||||| || |||| |
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|
| T |
34328891 |
taccatggaaattgaattaatttctagagaaaccatcaaaccttcatcaccaactccttctcacctcaaaatatacccactttctttcatagacaacatt |
34328990 |
T |
|
| Q |
184 |
nnnnnncgtttatatgttccagtcattttcttttacaatccaaatgagggtagtgaccaaaattccaatgtatcactacttcgaaaatctttatctcaac |
283 |
Q |
| |
|
||| ||||| ||| | ||| ||||||||| ||||| | | ||||||||||||| ||| | |||| | | || |||||||||||||||| |
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| T |
34328991 |
ttgatgcgtaactatgtgccattactttacttttacaaaccaaacaaagatagtgaccaaaatgtcaaaatttcacaattacgtaaatctttatctcaac |
34329090 |
T |
|
| Q |
284 |
ttttatctaaatactacccttttgctggcagattaaaagataaaattaccattgaatgtaatgatcaaggtgtgtcatttttggtcacaaagatcaaaaa |
383 |
Q |
| |
|
||||||| ||||| || ||||||||||| || || ||||||||||||||| | ||||||||||||||||||||| | ||| | |||||||| ||||||| |
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|
| T |
34329091 |
ttttatccaaatattatccttttgctggaaggttgaaagataaaattaccgtcgaatgtaatgatcaaggtgtgccgtttctagtcacaaatgtcaaaaa |
34329190 |
T |
|
| Q |
384 |
caaactttcagagattctcaaaaaccccacagataaaatattgaaccctttg |
435 |
Q |
| |
|
|||||| ||||| | ||| ||||||| | ||| ||| | |||||||||||| |
|
|
| T |
34329191 |
caaactatcagaagtcctccaaaaccctatagaaaaattgttgaaccctttg |
34329242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 363
Target Start/End: Original strand, 34333175 - 34333267
Alignment:
| Q |
271 |
tctttatctcaacttttatctaaatactacccttttgctggcagattaaaagataaaattaccattgaatgtaatgatcaaggtgtgtcattt |
363 |
Q |
| |
|
|||||||||||| || |||| | ||||||||| ||||| ||||| || |||||| | || |||| |||||||| |||||||||| ||||||| |
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|
| T |
34333175 |
tctttatctcaaattctatccatatactacccctttgcaggcaggttcaaagatcagctttccatcgaatgtaacgatcaaggtgcgtcattt |
34333267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 7e-59; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 84 - 399
Target Start/End: Complemental strand, 36622830 - 36622515
Alignment:
| Q |
84 |
taccatggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttttccactttctttcattgataacann |
183 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | | ||| ||||||||||||||| || |||| |
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|
| T |
36622830 |
taccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccttctcaccttaaactttatccactttctttcatagacaacatt |
36622731 |
T |
|
| Q |
184 |
nnnnnncgtttatatgttccagtcattttcttttacaatccaaatgagggtagtgaccaaaattccaatgtatcactacttcgaaaatctttatctcaac |
283 |
Q |
| |
|
|| ||| | ||| | ||| ||||||||| ||||| | ||| || |||||||| || ||||| ||| |||||||| |||||||||| |
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|
| T |
36622730 |
gtttgcagtaactatctgccattactttacttttacaacccaaacggaaatagagatcaaaattcaaaaacatcacaactccgaaaatccttatctcaac |
36622631 |
T |
|
| Q |
284 |
ttttatctaaatactacccttttgctggcagattaaaagataaaattaccattgaatgtaatgatcaaggtgtgtcatttttggtcacaaagatcaaaaa |
383 |
Q |
| |
|
|| ||||||||||||| | ||||||||| || | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| |
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|
| T |
36622630 |
ttctatctaaatactatcattttgctggtaggattaaagataaaattaccattgaatgtaatgatcaaggtgtgttatttttggtcacaaaggtaaaaaa |
36622531 |
T |
|
| Q |
384 |
caaactttcagagatt |
399 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
36622530 |
caaactttcagagatt |
36622515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 84 - 435
Target Start/End: Complemental strand, 36628067 - 36627716
Alignment:
| Q |
84 |
taccatggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttttccactttctttcattgataacann |
183 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||| ||||| || |||| |
|
|
| T |
36628067 |
taccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctcaaactttacccactttcattcatagacaacatt |
36627968 |
T |
|
| Q |
184 |
nnnnnncgtttatatgttccagtcattttcttttacaatccaaatgagggtagtgaccaaaattccaatgtatcactacttcgaaaatctttatctcaac |
283 |
Q |
| |
|
| |||| ||| | ||| |||||||| ||||| || ||| ||||||||||| || |||||| |||||||||||| |||||||||| |
|
|
| T |
36627967 |
attttcagaaactatgcgccattgctttatttttacaacccaaacaagagtatagaccaaaattcaaaaatatcacaacttcgaaaatccttatctcaac |
36627868 |
T |
|
| Q |
284 |
ttttatctaaatactacccttttgctggcagattaaaagataaaattaccattgaatgtaatgatcaaggtgtgtcatttttggtcacaaagatcaaaaa |
383 |
Q |
| |
|
|| |||| |||||||| ||||||||||| || | ||||||| ||||||||||||||||||||| ||||| |||| ||||| ||||||||||| ||||| |
|
|
| T |
36627867 |
ttctatccaaatactatccttttgctggtaggattaaagatagaattaccattgaatgtaatgaccaaggggtgttgtttttagtcacaaagataaaaaa |
36627768 |
T |
|
| Q |
384 |
caaactttcagagattctcaaaaaccccacagataaaatattgaaccctttg |
435 |
Q |
| |
|
|||||||||||||||||| |||| || || || ||| | |||||||||||| |
|
|
| T |
36627767 |
caaactttcagagattcttcaaaatcctactgaaaaattgttgaaccctttg |
36627716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 262 - 435
Target Start/End: Complemental strand, 36633456 - 36633283
Alignment:
| Q |
262 |
cttcgaaaatctttatctcaacttttatctaaatactacccttttgctggcagattaaaagataaaattaccattgaatgtaatgatcaaggtgtgtcat |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| | ||||||||| || | ||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
36633456 |
cttcgaaaatctttatctcaacttttatctaaattctatcattttgctggtaggattaaagataaaattaccattgaatgcaatgatcaaggtgtgttat |
36633357 |
T |
|
| Q |
362 |
ttttggtcacaaagatcaaaaacaaactttcagagattctcaaaaaccccacagataaaatattgaaccctttg |
435 |
Q |
| |
|
|||| ||||||||| | |||||||| ||||||||| |||| |||| ||||| || ||| | |||||||||||| |
|
|
| T |
36633356 |
tttttgtcacaaaggtaaaaaacaatctttcagagtttcttcaaaatcccactgaaaaattgttgaaccctttg |
36633283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 36634222 - 36634117
Alignment:
| Q |
62 |
atcagttgtagagccaatcaaataccatggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttttcc |
161 |
Q |
| |
|
|||||||| |||| |||| | ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| | ||||||| |
|
|
| T |
36634222 |
atcagttggagaggcaattgattaccatggagattgaattactttcaagagaaaccatcaaaccttcatcaccaactc---ctcatctcaaactttttcc |
36634126 |
T |
|
| Q |
162 |
actttcttt |
170 |
Q |
| |
|
||||||||| |
|
|
| T |
36634125 |
actttcttt |
36634117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 88 - 435
Target Start/End: Complemental strand, 45307192 - 45306840
Alignment:
| Q |
88 |
atggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttttccactttctttcattgataaca---nnn |
184 |
Q |
| |
|
|||||||| |||||| |||| ||||||||||||||||||||||| ||||||||| |||||| ||||| | ||||||||||||| | || | || |
|
|
| T |
45307192 |
atggaaatggaattagtttccagagaaaccatcaaaccttcatcgccaactcctcatcaccttagaatatatccactttctttcctagacagcatttcaa |
45307093 |
T |
|
| Q |
185 |
nnnnncgtttat-atgttccagt-cattttcttttacaatccaaatgagggtagtgaccaaaattccaatgtatcactacttcgaaaatctttatctcaa |
282 |
Q |
| |
|
|||| | |||| ||| | | ||||||||||| || ||||||| | |||||||||||||| || |||||| ||| ||||||| ||||||||| |
|
|
| T |
45307092 |
cattttgtttgtaatgtgccattactttttcttttaccattcaaatgaagacagtgaccaaaattcaaaaatatcacaactcagaaaatccttatctcaa |
45306993 |
T |
|
| Q |
283 |
cttttatctaaatactacccttttgctggcagattaaaagataaaattaccattgaatgtaatgatcaaggtgtgtcatttttggtcacaaagatcaaaa |
382 |
Q |
| |
|
|| |||| ||||||||| ||| ||||| || || |||||||||||||||||||||||||| || ||||||||| | ||| | || |||||||| |||| |
|
|
| T |
45306992 |
attctatccaaatactacattttcgctggtaggttgaaagataaaattaccattgaatgtaacgaccaaggtgtgacgtttatagtgacaaagataaaaa |
45306893 |
T |
|
| Q |
383 |
acaaactttcagagattctcaaaaaccccacagataaaatattgaaccctttg |
435 |
Q |
| |
|
| ||||| || || || ||| |||| ||| |||| ||| ||||||| ||||| |
|
|
| T |
45306892 |
ataaactatccgacatcctccaaaatccctcagaggaaacattgaactctttg |
45306840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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