View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4098_high_1 (Length: 517)
Name: NF4098_high_1
Description: NF4098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4098_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 32702082 - 32701573
Alignment:
| Q |
1 |
ttggatgatattaagttttgatgacatcgatgatattaatgtattttgataagagaaaatattgtacaaataaattaattttgatgagatagaacctaaa |
100 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32702082 |
ttggatggtattaagtttcgatgacatcgatgatattaatgtattttgataagagaaaatattgtacaaataaattaattttgatgagatagaacctaaa |
32701983 |
T |
|
| Q |
101 |
gatcagaggaccacagtctctactaatcaaatctattattacattagtatttctatttaattttttcaaagtgtttaatggatgtatctatgtgagaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32701982 |
gatcagaggaccacagtctctactaatcaaatctattattacattagtgtttctatttaattttttcaaagtgtttaatggatgtatctatgtgagaaaa |
32701883 |
T |
|
| Q |
201 |
taaaataaaaattatacttataaattcccaaaacaactggttacaactagag--------atgcagttcaatttcagctgtcatgtcctagagtagagta |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| |
|
|
| T |
32701882 |
taaaataaaaattatacttataaattcccaaaacaactggttacaactagagatgaagaaatgcagttcaatttcagctgtca--------actagagta |
32701791 |
T |
|
| Q |
293 |
cattactacaaagcaggcgtgaagtgtgatagttgatttctaaatctttctttctggcactgccaataattgagctggttt-----atttcatttcattt |
387 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32701790 |
cattgctacaaagcaggcgtgatgtgtgatagttgatttctaaatctttctttctggcactgccaataattgagctggtttatttcatttcatttcattt |
32701691 |
T |
|
| Q |
388 |
actcatttagcaattttatgctgcaaattttattgacttgggtataagcttaccccaacaagcaacaaccatataacagcacatgttatttgttctcaac |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
32701690 |
actcatttagcaattttatgctgcaaattttattgagctgtgtataagcttaccccaacaagcaacaaccatacaacagcacatgttatttgttcccaac |
32701591 |
T |
|
| Q |
488 |
acacaatcacaacacagg |
505 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
32701590 |
acacaatcacaacacagg |
32701573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University