View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4098_high_2 (Length: 500)
Name: NF4098_high_2
Description: NF4098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4098_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 95 - 323
Target Start/End: Complemental strand, 956550 - 956321
Alignment:
| Q |
95 |
catgacctgaagctagcatgaacaacaatgaaggttcaaatattgtaatggaaacttttattaaaagtggtgttccgtttataaagccattcatatagag |
194 |
Q |
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| T |
956550 |
catgacctaaagctagcatgaacaacaatgaaggttcaaatattgcaatggaaacttttattaaaggtagtgttccgtttgtaaagccattcatatagag |
956451 |
T |
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| Q |
195 |
gcataaactnnnnnnnttcctccacatatcaata-tttatgaagagatagaaacatggaatattagtaactgatgactaatattccatcaaaagagatag |
293 |
Q |
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| T |
956450 |
gcataaactaaaaaaattcctccacatatcaagagtttatgaagagatagaaacatggaatattagtaagtgatgaataatattccatcaaaagagatag |
956351 |
T |
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| Q |
294 |
aaacaaattgcaaaccctatttctttctca |
323 |
Q |
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| T |
956350 |
aaacaaattgcaaaccctagttccttctca |
956321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 485
Target Start/End: Complemental strand, 953456 - 953421
Alignment:
| Q |
450 |
ccattcaagagaggcccgtgggttttgtaacaaact |
485 |
Q |
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| T |
953456 |
ccattcaagagaggcccgtgggttttgtaacaaact |
953421 |
T |
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