View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4098_high_3 (Length: 492)
Name: NF4098_high_3
Description: NF4098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4098_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 73 - 354
Target Start/End: Original strand, 5770979 - 5771263
Alignment:
| Q |
73 |
acatttacatttacatgcactcaatgtctacaaccatatgtcaccattgcaccttacgtgtctatacgtggcttaattatagagagaaaagctcttcata |
172 |
Q |
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| T |
5770979 |
acatttacatttacatgcactcaatgtctacaaccatatgtcaccattgcaccttacgtgtctatacgtggcttaattatagagagaaaagctcttcata |
5771078 |
T |
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| Q |
173 |
aattggagtgtacatatattattaatttactaacaattatagcagtaggttttgtcaattatattgatgcacaaaaacaaagcaaaaagacacagtatca |
272 |
Q |
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| T |
5771079 |
aattggagtgtacatatattatt-attccctaacaattatagcagtaggttttgtcaattatattgatgcacaaaaacaaagcaaaaag--acagtatca |
5771175 |
T |
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| Q |
273 |
c----aattataaggaaaatttatatcaagagcgctattcgttgtgctttcgtgaatta--ttattcgctacatatagcatttttcat |
354 |
Q |
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| T |
5771176 |
cttataattataaggaaaatttatatcaagagcgctattcgttgtgctttcgtgaattattttattcgctacatatagcatttttcat |
5771263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 353 - 474
Target Start/End: Complemental strand, 2385906 - 2385785
Alignment:
| Q |
353 |
atattttgcagtcctttaagttgtttaattatataagctaagtcatttatgtttatttttgtctcgcattgatcctttaagtctcattacgtggacaacg |
452 |
Q |
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| T |
2385906 |
atattttgcagtcctttaagttgtttaattatataagcttagtcatttatgtttatttttgtctcgcattgatcctttaagtctcattacgtggacaacg |
2385807 |
T |
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| Q |
453 |
ttacactttttgacacatatgt |
474 |
Q |
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| T |
2385806 |
ttacactttttgacacatatgt |
2385785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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