View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4098_high_5 (Length: 447)
Name: NF4098_high_5
Description: NF4098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4098_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 10 - 429
Target Start/End: Complemental strand, 31437910 - 31437497
Alignment:
| Q |
10 |
acatcatcagaggattctgcagaccatcaccaagacttccaagagtcccgaagaacatcaacaatttatcaaatccatctgcgtaacgaaacatgctatt |
109 |
Q |
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| T |
31437910 |
acatcatgagaggattctgcagaccatcaccaagacttccaagagtcccgaagaacatcaacaatttatcgaatccatctgcataacgaaacatgctatt |
31437811 |
T |
|
| Q |
110 |
gctccccattttccctatagactctcccttttggagagataccttttcttagaaaggttcactaagcttgatcaacaatctcagtacaaaaaacaacttg |
209 |
Q |
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| T |
31437810 |
gctccccattttccctatagactctcccttttggagagataccttttcttagaaaggttcactaagcttgatcaacaatctcagtacaaaaaacaacttg |
31437711 |
T |
|
| Q |
210 |
aaaagacttatataaacttattaagatgctcttagacaagtaggaaaatcagcagccagcatgtgactcttactattgtctttttacaaacaaagccgtt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31437710 |
aaaagacttatataaacttattaagatgctcttagacaagtaggaaaatcagcagccagcatgtgactcttactattgtctttttacaaacaaagccgtt |
31437611 |
T |
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| Q |
310 |
ctcaatatatatactactactactatatagaagattcatgaattgacattcctaagatattgttcaacttgaactttgtttgtgtgacataataatatgc |
409 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31437610 |
ctcaatatatatactacta------tatagaagattcatgaattgacattcctaagatattgttcaacttgaactttgtttgtgtgacataataatatgc |
31437517 |
T |
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| Q |
410 |
tgttttaatttgtttgttat |
429 |
Q |
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|||||||||||||||||||| |
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| T |
31437516 |
tgttttaatttgtttgttat |
31437497 |
T |
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