View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4098_low_13 (Length: 317)
Name: NF4098_low_13
Description: NF4098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4098_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 118 - 306
Target Start/End: Complemental strand, 3984252 - 3984052
Alignment:
| Q |
118 |
aaaattaaggtataattgtttatatttgaatacttttttaatggatttgatttcatagttttaaaaataatgacagtataaaggagaagatgaataagaa |
217 |
Q |
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| T |
3984252 |
aaaattaaggtatcattgtttatatttgaatacttttttaacggatttgatttcttagttttaaaaataatgacagtataaaggagaagatgaataagaa |
3984153 |
T |
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| Q |
218 |
gacaatcaaaacaaataataata------------atgttatggtaacaaattacaaggacggggaaggggaaggggatgaatacatgagttgatattga |
305 |
Q |
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| T |
3984152 |
gagaatcaaaacaaataataataatgtaatatattatgttatggtaacaaattacaaggacggggaaggggaaggggatgaatacatgagttgatattga |
3984053 |
T |
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| Q |
306 |
t |
306 |
Q |
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| T |
3984052 |
t |
3984052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 3984318 - 3984279
Alignment:
| Q |
1 |
agctcactgagtattctttgtgtgatgatgatgattgtat |
40 |
Q |
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| T |
3984318 |
agctcactgagtattctttgtgtgatgataatgattgtat |
3984279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 306
Target Start/End: Original strand, 741311 - 741502
Alignment:
| Q |
121 |
attaaggtataattgtttatatttgaatacttttttaatggatttgatttcatagttttaaaaataatgacagtataaaggagaagatgaataagaagac |
220 |
Q |
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| T |
741311 |
attaaggtaagattgtttacaattgaatacacttttaacggatttgatttcttaattttaaaaattgtgacaatataaaggacaagatggataaaaagag |
741410 |
T |
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| Q |
221 |
aatcaaaacaaataataataatg-------ttatggtaacaaattacaaggacggggaaggggaaggggatgaatacatgagttgatattgat |
306 |
Q |
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| T |
741411 |
gatcaaaataattaa-aataatgtgatttattatgataacaaatgacaaggaaggggaagaggatggggatgagggcatgagttgatattgat |
741502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 118 - 303
Target Start/End: Complemental strand, 797579 - 797388
Alignment:
| Q |
118 |
aaaattaaggtataattgtttatatttgaatacttttttaatggatttgatttcatagttttaaaaataatgacagtataaaggagaagatgaataagaa |
217 |
Q |
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||||||||||| | ||||||||| |||||||| ||||||| | |||||||||| || ||| |||||| ||||| ||||||| |||||||| |||| || |
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| T |
797579 |
aaaattaaggtttgattgtttatcattgaatacatttttaacgtatttgatttcctaatttaaaaaattgtgacaatataaagaagaagatggataaaaa |
797480 |
T |
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| Q |
218 |
gacaatcaaaacaaataataataatg-------ttatggtaacaaattacaaggacggggaaggggaaggggatgaatacatgagttgatatt |
303 |
Q |
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| T |
797479 |
gaggatcaaaa-taataaaaataatgtgatttattatggtaataaatgacaaggaaggggaagaggttggggatgacgacatgagttgatatt |
797388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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