View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4098_low_17 (Length: 227)
Name: NF4098_low_17
Description: NF4098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4098_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 49 - 208
Target Start/End: Complemental strand, 14691387 - 14691228
Alignment:
| Q |
49 |
ttgtaagagactaatttggatactatttttgtcgggaagtactttgagtattactttttgtcataaactacattgagtcgtgtccaatttgttacgaact |
148 |
Q |
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| T |
14691387 |
ttgtgagagactaatttggatattaattttgtccgaaagtaatttgagtattactttttgtcataaactacatcgagtcgcgtccaatttgttacgaact |
14691288 |
T |
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| Q |
149 |
aattcggtatttagtctatttataaagcaacatcggaacaataagacatgtatgcagaat |
208 |
Q |
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| T |
14691287 |
aattcggtattcagtctatttataaagcaacatcgaaacaatgagacatgtatgcagaat |
14691228 |
T |
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Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 28423070 - 28422882
Alignment:
| Q |
15 |
catagggactaatgtgtcacttgtatgtatgaaattgtaagagactaatttggatactatttttgtcgggaagtactttgagtattactttttgtcataa |
114 |
Q |
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| T |
28423070 |
catagggactaatgtgttacctgtatgta----actgtgagagactaatttggatattaattttgtcaggaagtaatttgagtattactttt-gtcataa |
28422976 |
T |
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| Q |
115 |
actacattgagtcgtgtccaatttgttacgaactaattcggtatttagtctatttataaagcaacatcggaacaataagacatgtatgcagaat |
208 |
Q |
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| T |
28422975 |
actacattgagtcgcgttcaatttgttaggggctaattcaatatttagtttatttataaagcaacatcggaacaataagacatgtatgcagaat |
28422882 |
T |
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