View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4098_low_2 (Length: 512)
Name: NF4098_low_2
Description: NF4098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4098_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 6687427 - 6687914
Alignment:
| Q |
1 |
atgaatgtaactctcgatgtttttggctaaactatattctactaaaatgatattgcaatttacttaactctcctttcaaaataattgtcctttcccttaa |
100 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6687427 |
atgaatgtaactctcgatgtttt-ggctaatctatattctactaaaatgatattgcaatttacttaactctcctttcaaaataattgtcctttcccttaa |
6687525 |
T |
|
| Q |
101 |
tatggtgacagaacaatgcataatcaaattttcttaactctttctttcnnnnnnnnnnnnnnnnnttcttaactttagaatacatagcatactcaagttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6687526 |
tatggtgacagaacaatgcataatcaaattttcttaactctttctttcaaaaaaaaaaa------ttcttaactttagaatacatagcatactcaagttt |
6687619 |
T |
|
| Q |
201 |
tctatcattacaaccgccgtacaaaattcattggctaatacatgcattacactgcttcaacagctcacctaatgacatctgagatagc--aaaatatatt |
298 |
Q |
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|
||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6687620 |
tctatcattacaaccactgtacaaaattcattggctaatacatgcattacaccgcttcaacagctcacctaatgacatctgagatagcaaaaaatatatt |
6687719 |
T |
|
| Q |
299 |
tcaatggtattagcttatgtcaatttaagtaggctaatttaacttctttnnnnnnnnnttgtatcagctaatgaacataaactacacgtagttagcgaga |
398 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6687720 |
tcaatggtattagcttatgtcaatttgaataggctaatttaacttc-ttaaaaaaaaattgtatcaactaatgaacataaactacacgtagttagcgaga |
6687818 |
T |
|
| Q |
399 |
ccataagaacaatagaatcaagatataatcttcagctcctgcatgcatcatgtgagattgagatacatgtaaaaagatcgcttctcatctaaatcc |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6687819 |
ccataagaacaatagaatcaagatataatcttcagctcctgcatacatcatgtgagattgagatacatgtaaaaagatcacttctcatctaaatcc |
6687914 |
T |
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Back To:
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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 27740468 - 27740361
Alignment:
| Q |
29 |
aaactatattctacta-aaatgatattgcaatttacttaactctcctttcaaaataattgtcctttcccttaatatggtgacagaacaatgcataatcaa |
127 |
Q |
| |
|
||||||||||||||| |||| |||| || ||||||| ||||||| || |||||||| | |||||||| || |||| ||| ||||||||||||| |||| |
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| T |
27740468 |
aaactatattctactctaaataatatcgcgatttactaaactctcgtt-caaaataagtatcctttcc-ttcgtatgatgatagaacaatgcatactcaa |
27740371 |
T |
|
| Q |
128 |
attttcttaa |
137 |
Q |
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|||||||||| |
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|
| T |
27740370 |
attttcttaa |
27740361 |
T |
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