View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4098_low_9 (Length: 376)

Name: NF4098_low_9
Description: NF4098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4098_low_9
NF4098_low_9
[»] chr5 (5 HSPs)
chr5 (234-359)||(14691386-14691509)
chr5 (50-139)||(28422987-28423076)
chr5 (202-358)||(14683979-14684135)
chr5 (50-100)||(14691334-14691384)
chr5 (81-141)||(14680829-14680889)
[»] chr8 (1 HSPs)
chr8 (295-358)||(2438459-2438522)


Alignment Details
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 234 - 359
Target Start/End: Original strand, 14691386 - 14691509
Alignment:
Q  234 aagaaatcgaagatttaattaacattaaggaattaccatttgaataggaataaaaaatttagtaacaaattcggaaaatggactcgtgttaatttccaat 333  Q
    |||||||||| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  14691386 aagaaatcgatgatttaattaatagtatggaattaccatttgaataggaataaaaaatttagtaacaaaatcggaagatgaactcgtgttaatttccaat 14691485  T
Q  334 caatttatataaggttgaaatcaatt 359  Q
      ||||||||||||||||||||||||    
T  14691486 --atttatataaggttgaaatcaatt 14691509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 28422987 - 28423076
Alignment:
Q  50 gtaatactgaaattacttcctgacaaaattaatatccaaactagtctctcagaattacatacatgtgacacattagtccctatgttagag 139  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||| | ||||||||| || |||||||||||||||||||||||    
T  28422987 gtaatactcaaattacttcctgacaaaattaatatccaaattagtctctcacagttacatacaggtaacacattagtccctatgttagag 28423076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 202 - 358
Target Start/End: Original strand, 14683979 - 14684135
Alignment:
Q  202 ttcttaatacttgatcttatttatggtcacctaagaaatcgaagatttaattaacattaaggaattaccatttgaataggaataaaaaatttagtaacaa 301  Q
    ||||||||  ||| ||||||||| ||| |||||||||||| | ||||||||||| ||||||||||||| |||| |||||||||  |||||| | |||| |    
T  14683979 ttcttaatggttgttcttatttaaggttacctaagaaatcaatgatttaattaatattaaggaattactatttcaataggaattgaaaattcaataacca 14684078  T
Q  302 attcggaaaatggactcgtgttaatttccaatcaatttatataaggttgaaatcaat 358  Q
    ||| |||| ||| | ||   |||||||||||||||||||| ||||||||||||||||    
T  14684079 atttggaagatgaaatcacattaatttccaatcaatttatgtaaggttgaaatcaat 14684135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 14691334 - 14691384
Alignment:
Q  50 gtaatactgaaattacttcctgacaaaattaatatccaaactagtctctca 100  Q
    |||||||| ||||||||| | ||||||||||||||||||| ||||||||||    
T  14691334 gtaatactcaaattactttcggacaaaattaatatccaaattagtctctca 14691384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 14680889 - 14680829
Alignment:
Q  81 atatccaaactagtctctcagaattacatacatgtgacacattagtccctatgttagagcc 141  Q
    ||||||||| |||||||||| ||||||||||| || |||||||| |||  |||||||||||    
T  14680889 atatccaaattagtctctcataattacatacaggttacacattattccgaatgttagagcc 14680829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 2438459 - 2438522
Alignment:
Q  295 gtaacaaattcggaaaatggactcgtgttaatttccaatcaatttatataaggttgaaatcaat 358  Q
    |||||||| || ||| ||| |||| ||||||||||||||||||||  |||||||||||||||||    
T  2438459 gtaacaaactcagaatatgaactcatgttaatttccaatcaatttgcataaggttgaaatcaat 2438522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University