View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4100_high_5 (Length: 331)

Name: NF4100_high_5
Description: NF4100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4100_high_5
NF4100_high_5
[»] scaffold0010 (1 HSPs)
scaffold0010 (19-321)||(251420-251722)
[»] chr4 (3 HSPs)
chr4 (244-296)||(41501984-41502036)
chr4 (183-214)||(29423341-29423372)
chr4 (183-233)||(14110129-14110179)
[»] chr7 (2 HSPs)
chr7 (246-292)||(39052724-39052770)
chr7 (178-236)||(37059973-37060031)
[»] chr6 (2 HSPs)
chr6 (183-235)||(17593469-17593521)
chr6 (183-235)||(17699995-17700047)
[»] chr5 (2 HSPs)
chr5 (244-296)||(29635498-29635550)
chr5 (178-235)||(16214970-16215027)
[»] chr1 (3 HSPs)
chr1 (243-287)||(33054299-33054343)
chr1 (180-235)||(27811331-27811386)
chr1 (243-293)||(22580468-22580518)
[»] chr8 (2 HSPs)
chr8 (164-233)||(4809452-4809521)
chr8 (244-292)||(3695239-3695287)
[»] chr2 (2 HSPs)
chr2 (183-235)||(29848672-29848724)
chr2 (183-232)||(28043443-28043492)


Alignment Details
Target: scaffold0010 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 251722 - 251420
Alignment:
Q  19 agtgtattctttccaacaacttcttcagtacgaatagttttatatttatataagcgaggaaactattgcaaagagatgttggagctttaggatgagacaa 118  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  251722 agtgtattctttccaacaacttcttcggtaagaatagttttatatttatataagcgaggaaactattgcaaagagatgttggagctttaggatgagacaa 251623  T
Q  119 tagttcataccatagttacataatacgcaatttgggttggtacacggtactcgttcagattcgtggtacgcgacatgagaagaattcagtacgtatagga 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  251622 tagttcataccatagttacataatacgcaatttgggttggtacatggtactcgttcagattcgtggtacgcgacatgagaagaattcggtacgtattgga 251523  T
Q  219 gtatagagcttcggtacttgtcggtcagtggcggaggcacatagtgccgaggggatgcacttgccaaccctcaaaatttcnnnnnnncacatatatccct 318  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  251522 gtatagagctttggtacgtgtcggtcagtggcagaggcacatagtgccgaggggatgcacttgccaaccctcaaaatttctttttttcacatatatccct 251423  T
Q  319 atg 321  Q
    |||    
T  251422 atg 251420  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 41502036 - 41501984
Alignment:
Q  244 cagtggcggaggcacatagtgccgaggggatgcacttgccaaccctcaaaatt 296  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41502036 cagtggcggaggcacatagtgctgaggggatgcacttgccaaccctcaaaatt 41501984  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 214
Target Start/End: Complemental strand, 29423372 - 29423341
Alignment:
Q  183 ggtacgcgacatgagaagaattcagtacgtat 214  Q
    ||||||||||||||||||||||||||||||||    
T  29423372 ggtacgcgacatgagaagaattcagtacgtat 29423341  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 14110179 - 14110129
Alignment:
Q  183 ggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggt 233  Q
    |||||||| |||||||||||||| ||| ||| ||| |||||||||||||||    
T  14110179 ggtacgcggcatgagaagaattcggtatgtacaggggtatagagcttcggt 14110129  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 39052770 - 39052724
Alignment:
Q  246 gtggcggaggcacatagtgccgaggggatgcacttgccaaccctcaa 292  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  39052770 gtggcggaggcacatagtgctgaggggatgcacttgccaaccctcaa 39052724  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 37060031 - 37059973
Alignment:
Q  178 ttcgtggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtact 236  Q
    |||| ||| ||| ||||||||||||||| |||||||| ||||||||||||||| |||||    
T  37060031 ttcgcggttcgctacatgagaagaattcggtacgtatgggagtatagagcttcagtact 37059973  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 17593469 - 17593521
Alignment:
Q  183 ggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtac 235  Q
    ||||| ||||||||||||||||  |||||||||||||||||||| ||||||||    
T  17593469 ggtacccgacatgagaagaattaggtacgtataggagtatagagtttcggtac 17593521  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 17699995 - 17700047
Alignment:
Q  183 ggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtac 235  Q
    ||||| ||||||||||||||||  |||||||||||||||||||| ||| ||||    
T  17699995 ggtacccgacatgagaagaattaggtacgtataggagtatagagtttcagtac 17700047  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 29635498 - 29635550
Alignment:
Q  244 cagtggcggaggcacatagtgccgaggggatgcacttgccaaccctcaaaatt 296  Q
    |||||||||||| ||||||||  ||||||||||||||||||||| ||||||||    
T  29635498 cagtggcggaggtacatagtgatgaggggatgcacttgccaaccttcaaaatt 29635550  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 16215027 - 16214970
Alignment:
Q  178 ttcgtggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtac 235  Q
    |||| ||||||||||||||||||||||  ||||| |||||  ||||||| ||||||||    
T  16215027 ttcgcggtacgcgacatgagaagaatttggtacgcatagggatatagagtttcggtac 16214970  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 33054343 - 33054299
Alignment:
Q  243 tcagtggcggaggcacatagtgccgaggggatgcacttgccaacc 287  Q
    ||||||||||||||||||||| | |||||||||||||||||||||    
T  33054343 tcagtggcggaggcacatagtactgaggggatgcacttgccaacc 33054299  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 27811386 - 27811331
Alignment:
Q  180 cgtggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtac 235  Q
    |||||||||||||||||||||||||  |||||| | || |||||||||||||||||    
T  27811386 cgtggtacgcgacatgagaagaattgggtacgtttgggggtatagagcttcggtac 27811331  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 293
Target Start/End: Original strand, 22580468 - 22580518
Alignment:
Q  243 tcagtggcggaggcacatagtgccgaggggatgcacttgccaaccctcaaa 293  Q
    ||||||||||  ||||||||| |  ||||||||||||||||||||||||||    
T  22580468 tcagtggcgggtgcacatagtcctcaggggatgcacttgccaaccctcaaa 22580518  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 4809521 - 4809452
Alignment:
Q  164 ggtactcgttcagattcgtggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggt 233  Q
    |||||| |||| ||| || ||||||||||||||||||||||| |||| | | || |||||||||||||||    
T  4809521 ggtactggttcggatacgcggtacgcgacatgagaagaattcggtacatttgggggtatagagcttcggt 4809452  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 3695287 - 3695239
Alignment:
Q  244 cagtggcggaggcacatagtgccgaggggatgcacttgccaaccctcaa 292  Q
    ||||||| |||||||||||||| |||  ||||||||||||||| |||||    
T  3695287 cagtggcagaggcacatagtgctgagaagatgcacttgccaactctcaa 3695239  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 29848672 - 29848724
Alignment:
Q  183 ggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtac 235  Q
    ||||| |||||||||||||||||  |||||| ||| |||||||||||||||||    
T  29848672 ggtacacgacatgagaagaattcgatacgtacaggggtatagagcttcggtac 29848724  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 28043492 - 28043443
Alignment:
Q  183 ggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcgg 232  Q
    |||||||||||||| || |||||||||| ||| || ||||||||||||||    
T  28043492 ggtacgcgacatgaaaataattcagtacatatgggggtatagagcttcgg 28043443  T

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