View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4100_low_1 (Length: 497)

Name: NF4100_low_1
Description: NF4100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4100_low_1
NF4100_low_1
[»] chr8 (9 HSPs)
chr8 (11-478)||(3017302-3017769)
chr8 (50-121)||(1527574-1527648)
chr8 (174-211)||(34338713-34338750)
chr8 (181-230)||(39560339-39560388)
chr8 (177-237)||(26819280-26819340)
chr8 (181-235)||(31188884-31188938)
chr8 (175-236)||(10744257-10744318)
chr8 (186-243)||(26762859-26762916)
chr8 (184-237)||(43059452-43059505)
[»] chr6 (4 HSPs)
chr6 (11-478)||(18361129-18361593)
chr6 (182-243)||(25094709-25094770)
chr6 (186-231)||(31650307-31650352)
chr6 (186-237)||(8782973-8783022)
[»] chr1 (3 HSPs)
chr1 (185-237)||(14303943-14303995)
chr1 (198-243)||(15867621-15867666)
chr1 (182-230)||(32102333-32102381)
[»] chr7 (3 HSPs)
chr7 (180-237)||(5376306-5376363)
chr7 (177-237)||(35169971-35170031)
chr7 (184-231)||(18577512-18577560)
[»] chr2 (1 HSPs)
chr2 (181-230)||(5262448-5262497)
[»] chr5 (2 HSPs)
chr5 (174-217)||(7705348-7705391)
chr5 (195-231)||(16230791-16230827)
[»] chr4 (3 HSPs)
chr4 (200-230)||(17123220-17123250)
chr4 (198-243)||(18966011-18966056)
chr4 (186-234)||(37848421-37848469)
[»] chr3 (1 HSPs)
chr3 (181-230)||(38900006-38900055)


Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 478
Target Start/End: Original strand, 3017302 - 3017769
Alignment:
Q  11 cagagacaacttaaagaaattggtaccaaataagtacttaaaggaagtaactcagtcaatcaaggaaaatcattggcatgttcctatccctcaaatcata 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3017302 cagagacaacttaaagaaattggtaccaaataagtacttaaaggaagtaactcagtcaatcaaggaaaatcattggcatgttcctatccctccaatcata 3017401  T
Q  111 catggtaaaagaattagtttcacaaaggttaactttgagttacttaatgaatttagacagtcgacaaatcatgtgtgactttcaaagtagttatgattaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |   ||||||||||||||||||||||||||||||||||||    
T  3017402 catggtaaaagaattagtttcacaaaggttaactttgagttacttaacgaatttagacaatgatcaaatcatgtgtgactttcaaagtagttatgattaa 3017501  T
Q  211 agtcaaacttttttaatgatctgacgactatgaatgactgtctgtnnnnnnnctctacactgattgtaattttatgtcaataagcctttgatgggaaaac 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3017502 agtcaaacttttttaatgatctgacgactatgaatgactgtctgtaaaaaaactctacactgattgtaattttatgtcaataagcctttgatgggaaaac 3017601  T
Q  311 tttacactgattgtaaactttacactatgaatttgtgttctatctgacctattaattaatgcaaaataattttatgacattttctgagatgtcttctgca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3017602 tttacactgattgtaaactttacactatgaatttgtgttctatctgacctattaattaatgcaaaataattttatgacattttctgagatgtcttctgca 3017701  T
Q  411 aatcagaaaaagaatgggcttggaatgatgacatggagtttggaagacaaatgcttgcaggaacgcat 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3017702 aatcagaaaaagaatgggcttggaatgatgacatggagtttggaagacaaatgcttgcaggaacgcat 3017769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 1527574 - 1527648
Alignment:
Q  50 aaaggaagtaactcagtcaatcaaggaaaatcattggcatgt---tcctatccctcaaatcatacatggtaaaag 121  Q
    ||||||| |||||||   |||||||||||| |||||||||||   ||||||||||||||||||| ||||||||||    
T  1527574 aaaggaaataactcatgaaatcaaggaaaaccattggcatgttcctcctatccctcaaatcatatatggtaaaag 1527648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 34338713 - 34338750
Alignment:
Q  174 acaaatcatgtgtgactttcaaagtagttatgattaaa 211  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  34338713 acaaatcatgtgtgactttaaaagtagttatgattaaa 34338750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 39560339 - 39560388
Alignment:
Q  181 atgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgat 230  Q
    |||| |||||||  |||||||||||||||||||||||| |||||||||||    
T  39560339 atgtatgactttagaagtagttatgattaaagtcaaacatttttaatgat 39560388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 26819340 - 26819280
Alignment:
Q  177 aatcatgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacga 237  Q
    ||||||||||||||||  ||||||||  ||| |||||||||| ||||||||||||| ||||    
T  26819340 aatcatgtgtgactttagaagtagttgcgataaaagtcaaacatttttaatgatctaacga 26819280  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 31188938 - 31188884
Alignment:
Q  181 atgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgac 235  Q
    ||||||||||||| ||||| |||||||| |||| |||| ||| ||||||||||||    
T  31188938 atgtgtgactttcgaagtaattatgattgaagttaaacatttgtaatgatctgac 31188884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 10744318 - 10744257
Alignment:
Q  175 caaatcatgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacg 236  Q
    |||||||  |||||||||  ||| |||||| ||||||||||||| ||||||||||| |||||    
T  10744318 caaatcacatgtgactttagaagcagttataattaaagtcaaacgtttttaatgatgtgacg 10744257  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 26762916 - 26762859
Alignment:
Q  186 tgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacgactatga 243  Q
    |||||||  ||||| |||||||||||||||||| |||||| |||||||| || |||||    
T  26762916 tgactttagaagtaattatgattaaagtcaaacgtttttactgatctgaggattatga 26762859  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 43059505 - 43059452
Alignment:
Q  184 tgtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacga 237  Q
    |||||||||  |||||||||| |||||||||||| |||||| ||||| ||||||    
T  43059505 tgtgactttagaagtagttattattaaagtcaaagttttttgatgatttgacga 43059452  T

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Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 478
Target Start/End: Original strand, 18361129 - 18361593
Alignment:
Q  11 cagagacaacttaaagaaattggtaccaaataagtacttaaaggaagtaactcagtcaatcaaggaaaatcattggcatgttcctatccctcaaatcata 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||| |||| |||| |||||||    
T  18361129 cagagacaacttaaagaaattggtaccaaataagtacttaaagaaagtaactcggtcaatcaaggaaaaccattggcatgtttctattcctcgaatcata 18361228  T
Q  111 catggtaaaagaattagtttcacaaaggttaactttgagttacttaatgaatttagacagtcgacaaatcatgtgtgactttcaaagtagttatgattaa 210  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  18361229 catggtaaaagaattagtttcacaaaggttaactttgatatacttaaagaatttagacagtgaacaaatcatgtgtgactttcaaagtagttatgattaa 18361328  T
Q  211 agtcaaacttttttaatgatctgacgactatgaatgactgtctgt---nnnnnnnctctacactgattgtaattttatgtcaataagcctttgatgggaa 307  Q
    ||| |||| |||||||||||||||||||||||||||||||| |||          || ||||||||||||||||| ||||||||||||||||||||| ||    
T  18361329 agttaaacgtttttaatgatctgacgactatgaatgactgtatgtgtaaaaatatctttacactgattgtaatttaatgtcaataagcctttgatggtaa 18361428  T
Q  308 aactttacactgattgtaaactttacactat---gaatttgtgttctatctgacctattaattaatgcaaaataattttatgacattttctgagatgtct 404  Q
    |       | |  || | ||| ||| || ||   ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18361429 a-------agtagttcttaac-ttaaacgatgaagaatttgtgttctgtctgacctattaattaatgcaaaataa-tttatgacattttctgagatgtct 18361519  T
Q  405 tctgcaaatcagaaaaagaatgggcttggaatgatgacatggagtttggaagacaaatgcttgcaggaacgcat 478  Q
    | ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18361520 tatgcatttcagaaaaagaatgggcttggaatgatgacatggagtttggaagacaaatgcttgcaggaatgcat 18361593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 25094709 - 25094770
Alignment:
Q  182 tgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacgactatga 243  Q
    ||||||||||| |||||| |||||||||||||||||| | |||||||||  ||||| |||||    
T  25094709 tgtgtgactttaaaagtacttatgattaaagtcaaacatgtttaatgattagacgattatga 25094770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 31650352 - 31650307
Alignment:
Q  186 tgactttcaaagtagttatgattaaagtcaaacttttttaatgatc 231  Q
    |||||||  |||||||||||||||||||||||| ||||||||||||    
T  31650352 tgactttagaagtagttatgattaaagtcaaacatttttaatgatc 31650307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 8783022 - 8782973
Alignment:
Q  186 tgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacga 237  Q
    |||||||  |||||||||||||||||||||||  |||||||||||| |||||    
T  8783022 tgacttttgaagtagttatgattaaagtcaaa--tttttaatgatcggacga 8782973  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 14303995 - 14303943
Alignment:
Q  185 gtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacga 237  Q
    |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||    
T  14303995 gtgactttaaaagtagttatgattaaagtcaaacttttataacgatctgacga 14303943  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 15867621 - 15867666
Alignment:
Q  198 tagttatgattaaagtcaaacttttttaatgatctgacgactatga 243  Q
    |||||||||||||||||||||  |||||||||| |||||| |||||    
T  15867621 tagttatgattaaagtcaaacagttttaatgatatgacgattatga 15867666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 32102381 - 32102333
Alignment:
Q  182 tgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgat 230  Q
    ||||||| ||| ||| || |||||||||||||||||| |||||||||||    
T  32102381 tgtgtgattttaaaattatttatgattaaagtcaaacatttttaatgat 32102333  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 5376363 - 5376306
Alignment:
Q  180 catgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacga 237  Q
    |||||| ||||||  ||||||||||||||| |||||||| ||||||||||||||||||    
T  5376363 catgtgcgactttagaagtagttatgattacagtcaaacgtttttaatgatctgacga 5376306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 35170031 - 35169971
Alignment:
Q  177 aatcatgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgatctgacga 237  Q
    ||||||||||||||||  |||||||||||||||||||||||| | |||||| |||| ||||    
T  35170031 aatcatgtgtgactttagaagtagttatgattaaagtcaaacatctttaataatctaacga 35169971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 18577512 - 18577560
Alignment:
Q  184 tgtgactttcaaagtagttatgattaaagtcaaac-ttttttaatgatc 231  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||||    
T  18577512 tgtgactttcgaagtagttatgtttaaagtcaaacattttttaatgatc 18577560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 5262448 - 5262497
Alignment:
Q  181 atgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgat 230  Q
    |||||||| |||| ||||||||||||| ||||||||||||||| ||||||    
T  5262448 atgtgtgagtttcgaagtagttatgatcaaagtcaaactttttaaatgat 5262497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 7705391 - 7705348
Alignment:
Q  174 acaaatcatgtgtgactttcaaagtagttatgattaaagtcaaa 217  Q
    ||||||||||||||||||| ||||| |||||||| |||||||||    
T  7705391 acaaatcatgtgtgactttaaaagtggttatgataaaagtcaaa 7705348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 16230791 - 16230827
Alignment:
Q  195 aagtagttatgattaaagtcaaacttttttaatgatc 231  Q
    |||||||||||||||||||||||| |||| |||||||    
T  16230791 aagtagttatgattaaagtcaaacattttaaatgatc 16230827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 230
Target Start/End: Original strand, 17123220 - 17123250
Alignment:
Q  200 gttatgattaaagtcaaacttttttaatgat 230  Q
    |||||||||||||||||||||||||||||||    
T  17123220 gttatgattaaagtcaaacttttttaatgat 17123250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 18966011 - 18966056
Alignment:
Q  198 tagttatgattaaagtcaaacttttttaatgatctgacgactatga 243  Q
    |||||| |||||||||||||| ||||||||||| |||||| |||||    
T  18966011 tagttacgattaaagtcaaacatttttaatgatatgacgattatga 18966056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 37848421 - 37848469
Alignment:
Q  186 tgactttcaaagtagttatgattaaagtcaaacttttttaatgatctga 234  Q
    ||||||| |||||||||| |||||||||||||  |||||| ||||||||    
T  37848421 tgactttaaaagtagttacgattaaagtcaaatgtttttagtgatctga 37848469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 38900055 - 38900006
Alignment:
Q  181 atgtgtgactttcaaagtagttatgattaaagtcaaacttttttaatgat 230  Q
    |||||||||||| |||||||||| |||  ||||||||| |||||||||||    
T  38900055 atgtgtgactttaaaagtagttaggatacaagtcaaacgtttttaatgat 38900006  T

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