View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4100_low_12 (Length: 218)

Name: NF4100_low_12
Description: NF4100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4100_low_12
NF4100_low_12
[»] chr7 (3 HSPs)
chr7 (16-113)||(34360437-34360534)
chr7 (32-95)||(20028786-20028848)
chr7 (50-97)||(15765351-15765398)
[»] scaffold0422 (1 HSPs)
scaffold0422 (30-111)||(5100-5180)
[»] scaffold0138 (1 HSPs)
scaffold0138 (30-111)||(5693-5773)
[»] chr8 (3 HSPs)
chr8 (30-111)||(15448793-15448873)
chr8 (30-111)||(23815243-23815323)
chr8 (74-113)||(24653772-24653811)
[»] scaffold0362 (1 HSPs)
scaffold0362 (49-110)||(3290-3351)
[»] chr5 (2 HSPs)
chr5 (50-111)||(29902671-29902732)
chr5 (75-111)||(25676386-25676422)
[»] chr2 (1 HSPs)
chr2 (30-111)||(45487886-45487966)
[»] scaffold0001 (1 HSPs)
scaffold0001 (30-111)||(6329-6412)
[»] chr6 (4 HSPs)
chr6 (16-94)||(14778083-14778160)
chr6 (49-103)||(20049585-20049639)
chr6 (49-103)||(20057446-20057500)
chr6 (50-97)||(1550977-1551024)
[»] scaffold0473 (1 HSPs)
scaffold0473 (30-111)||(7657-7736)
[»] chr3 (2 HSPs)
chr3 (16-113)||(49965800-49965895)
chr3 (49-111)||(14253567-14253631)
[»] scaffold0182 (1 HSPs)
scaffold0182 (58-103)||(6693-6738)
[»] scaffold0104 (1 HSPs)
scaffold0104 (74-111)||(11904-11941)
[»] scaffold0020 (1 HSPs)
scaffold0020 (49-98)||(105185-105234)
[»] scaffold0037 (1 HSPs)
scaffold0037 (16-97)||(77475-77553)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 34360437 - 34360534
Alignment:
Q  16 cacagagacctttaacctaaactatgaagtataaaaaataacgcatacacccacacatgcacacatgcatgatttacattaaagcctatgatacattc 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  34360437 cacaaagacctttaacctaaactatgaagtataaaaaataacgcatacacccacacatgcacatatgcatgatttacattaaagtctatgatacattc 34360534  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 20028848 - 20028786
Alignment:
Q  32 ctaaactatgaagtataaaaaataacgcatacacccacacatgcacacatgcatgatttacatt 95  Q
    ||||||||||||| ||||||| ||| ||||||||||||||| ||||||||| ||||||||||||    
T  20028848 ctaaactatgaagcataaaaa-taaagcatacacccacacacgcacacatgaatgatttacatt 20028786  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 15765351 - 15765398
Alignment:
Q  50 aaaataacgcatacacccacacatgcacacatgcatgatttacattaa 97  Q
    ||||||| |||||||| |||||| ||||||||||||||||||||||||    
T  15765351 aaaataaagcatacacgcacacacgcacacatgcatgatttacattaa 15765398  T

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Target: scaffold0422 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 5100 - 5180
Alignment:
Q  30 acctaaactatgaagtataaaaaataacgcatacacccacacatgcacacatgcatgatttacattaaagcctatgatacat 111  Q
    ||||||||||||||  ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  5100 acctaaactatgaaacataaaaa-taaagcatacacccacacacgcacacatgcatgatttacattaaagcctaagatacat 5180  T

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Target: scaffold0138 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 5773 - 5693
Alignment:
Q  30 acctaaactatgaagtataaaaaataacgcatacacccacacatgcacacatgcatgatttacattaaagcctatgatacat 111  Q
    ||||||||||||||  ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  5773 acctaaactatgaaacataaaaa-taaagcatacacccacacacgcacacatgcatgatttacattaaagcctaggatacat 5693  T

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Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 15448793 - 15448873
Alignment:
Q  30 acctaaactatgaagtataaaaaataacgcatacacccacacatgcacacatgcatgatttacattaaagcctatgatacat 111  Q
    ||||||||||||||  ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  15448793 acctaaactatgaaacataaaaa-taaagcatacacccacacacgcacacatgcatgatttacattaaagcctaggatacat 15448873  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 23815243 - 23815323
Alignment:
Q  30 acctaaactatgaagtataaaaaataacgcatacacccacacatgcacacatgcatgatttacattaaagcctatgatacat 111  Q
    ||||||||||||||  ||||||| ||| |||| |||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  23815243 acctaaactatgaaacataaaaa-taaagcatgcacccacacacgcacatatgcatgatttacattaaagcctaggatacat 23815323  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 113
Target Start/End: Original strand, 24653772 - 24653811
Alignment:
Q  74 gcacacatgcatgatttacattaaagcctatgatacattc 113  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  24653772 gcacacatgcatgatttacattaaagcctaggatacattc 24653811  T

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Target: scaffold0362 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 3290 - 3351
Alignment:
Q  49 aaaaataacgcatacacccacacatgcacacatgcatgatttacattaaagcctatgataca 110  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  3290 aaaaataaagcatacacccacacacgcacacatgcatgatttacattaaagcctaggataca 3351  T

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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 29902732 - 29902671
Alignment:
Q  50 aaaataacgcatacacccacacatgcacacatgcatgatttacattaaagcctatgatacat 111  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  29902732 aaaataaagcatacacccacacacgcacacatgcatgatttacattaaagcctaggatacat 29902671  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 25676386 - 25676422
Alignment:
Q  75 cacacatgcatgatttacattaaagcctatgatacat 111  Q
    ||||||||||||||||||||||||||||| |||||||    
T  25676386 cacacatgcatgatttacattaaagcctaggatacat 25676422  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 45487886 - 45487966
Alignment:
Q  30 acctaaactatgaagtataaaaaataacgcatacacccacacatgcacacatgcatgatttacattaaagcctatgatacat 111  Q
    ||||||||||||||  ||||||| ||| ||||||||||||||  |||||||||||||||||||||||||||||| |||||||    
T  45487886 acctaaactatgaaacataaaaa-taaagcatacacccacactcgcacacatgcatgatttacattaaagcctaggatacat 45487966  T

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Target: scaffold0001 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 6412 - 6329
Alignment:
Q  30 acctaaactatgaagtataaaaaa--taacgcatacacccacacatgcacacatgcatgatttacattaaagcctatgatacat 111  Q
    ||||||||||||||  ||||||||  ||| ||||||||||||||| |||| ||||||||||||||||||||||||| |||||||    
T  6412 acctaaactatgaaacataaaaaaaataaagcatacacccacacacgcactcatgcatgatttacattaaagcctaggatacat 6329  T

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Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 14778083 - 14778160
Alignment:
Q  16 cacagagacctttaacctaaactatgaagtataaaaaataacgcatacacccacacatgcacacatgcatgatttacat 94  Q
    |||| |||||||||||||||||||||||| ||||||| ||| | ||||||||||||| ||||||||| |||||||||||    
T  14778083 cacaaagacctttaacctaaactatgaagcataaaaa-taaagtatacacccacacacgcacacatgaatgatttacat 14778160  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 20049585 - 20049639
Alignment:
Q  49 aaaaataacgcatacacccacacatgcacacatgcatgatttacattaaagccta 103  Q
    |||||||| ||||||||||||||| |||||||||||||| |||||||||||||||    
T  20049585 aaaaataaagcatacacccacacacgcacacatgcatgacttacattaaagccta 20049639  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 20057446 - 20057500
Alignment:
Q  49 aaaaataacgcatacacccacacatgcacacatgcatgatttacattaaagccta 103  Q
    |||||||| ||||||||||||||| |||||||||||||| |||||||||||||||    
T  20057446 aaaaataaagcatacacccacacacgcacacatgcatgacttacattaaagccta 20057500  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 1551024 - 1550977
Alignment:
Q  50 aaaataacgcatacacccacacatgcacacatgcatgatttacattaa 97  Q
    ||||||| |||||||| |||||| ||||||||||||||||||||||||    
T  1551024 aaaataaagcatacacgcacacacgcacacatgcatgatttacattaa 1550977  T

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Target: scaffold0473 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0473
Description:

Target: scaffold0473; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 7657 - 7736
Alignment:
Q  30 acctaaactatgaagtataaaaaataacgcatacacccacacatgcacacatgcatgatttacattaaagcctatgatacat 111  Q
    ||||||||||||||  ||||||| ||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||||||    
T  7657 acctaaactatgaaacataaaaa-taaagcatacacc-acacacgcacacatgcatgatttacattaaagcctaggatacat 7736  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 49965800 - 49965895
Alignment:
Q  16 cacagagacctttaacctaaactatgaagtataaaaaataacgcatacacccacacatgcacacatgcatgatttacattaaagcctatgatacattc 113  Q
    |||| |||||||||||||||| ||| ||| ||||||| ||| |||||| | |||||| |||||||||||||||||||||| |||||||| ||||||||    
T  49965800 cacaaagacctttaacctaaattataaagcataaaaa-taaggcatacccacacacacgcacacatgcatgatttacatt-aagcctattatacattc 49965895  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 14253631 - 14253567
Alignment:
Q  49 aaaaataacgcatacacccacacatgcacaca--tgcatgatttacattaaagcctatgatacat 111  Q
    |||||||| |||||||||||||||  ||||||  |||||| |||||||||||||||| |||||||    
T  14253631 aaaaataaagcatacacccacacacacacacacatgcatggtttacattaaagcctaagatacat 14253567  T

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Target: scaffold0182 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 6738 - 6693
Alignment:
Q  58 gcatacacccacacatgcacacatgcatgatttacattaaagccta 103  Q
    |||| |||||||||| ||||||||||||||||||||||||| ||||    
T  6738 gcattcacccacacacgcacacatgcatgatttacattaaaaccta 6693  T

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Target: scaffold0104 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 11904 - 11941
Alignment:
Q  74 gcacacatgcatgatttacattaaagcctatgatacat 111  Q
    |||||||||||||||||||||||||||||| |||||||    
T  11904 gcacacatgcatgatttacattaaagcctaggatacat 11941  T

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Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 105185 - 105234
Alignment:
Q  49 aaaaataacgcatacacccacacatgcacacatgcatgatttacattaaa 98  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||| ||||    
T  105185 aaaaataaagcatacacccacacacgcacacatgaatgatttacaataaa 105234  T

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Target: scaffold0037 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 77475 - 77553
Alignment:
Q  16 cacagagacctttaacctaaactatgaagtataaaaaataacgcatacacccacacatgcacacatgcatgatttacattaa 97  Q
    |||| ||||||||||||||||||||  || ||||| | ||| |||||||| ||| |  ||||||||||||||||||||||||    
T  77475 cacaaagacctttaacctaaactatagagcataaaca-taaggcatacacacaccc--gcacacatgcatgatttacattaa 77553  T

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