View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4100_low_2 (Length: 487)
Name: NF4100_low_2
Description: NF4100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4100_low_2 |
 | |
|
| [»] scaffold1603 (1 HSPs) |
| | |
|
| [»] scaffold0027 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 45903467 - 45903310
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45903467 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaattttacacaatgtcagatcttaaccgttcacttcagatcaga |
45903368 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcctca |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45903367 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcctca |
45903310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 41570068 - 41570112
Alignment:
| Q |
129 |
ctacagcgtgcaactgcgtgtaaatattacagcaggaaatcctca |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41570068 |
ctacagcgtgcaactgcgtgtaaatattacagcaggaaatcctca |
41570112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 26377960 - 26377800
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26377960 |
aatctcagtcatcaatccatgatctgacggttccaattcacagcacaaatttcaacaatttcacacaatgtcagatcttaaccattcacttcagatcaga |
26377861 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcctcatcc |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26377860 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcctcatcc |
26377800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 23594569 - 23594723
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23594569 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacaaatttcaacaatttcacacaatgtcatatcttaaccgttcacttcagatcaga |
23594668 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcc |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23594669 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcc |
23594723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 14277261 - 14277420
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
|||||||||| ||||| |||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14277261 |
aatctcagccgtcaattcatgatctgacgattccaattcacagcacgaatttcaacaatttaacacaatgtcagatcttaaccgttcacttcagatcaga |
14277360 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcctcatcc |
176 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
14277361 |
cggtgtagaacagctatagcgtgcaactaagtgtaaata-tacagcaggaaatcctcatcc |
14277420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 1e-76; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 19596018 - 19596175
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19596018 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaattttacacaatatcagatcttaaccgttcacttcagatcaga |
19596117 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcctca |
173 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19596118 |
cggtgtagaacagctacagcgtgtaactgcgtgtaaatattacagcaggaaatcctca |
19596175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 46336462 - 46336308
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46336462 |
aatctcagccatcaatccatgatttgacggttccaattcacagcacaaatttcaataatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
46336363 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcc |
170 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46336362 |
cggtgtagaacaactacagcgtgcaactgcgtgtaaatattacagcaggaaatcc |
46336308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 32495774 - 32495927
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32495774 |
aatctcagccatcaatccatgatctgacggttccaattcacaacacaaatttcaataatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
32495873 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatc |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
32495874 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagtagaaaatc |
32495927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 43632998 - 43632838
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| || | |||||| |
|
|
| T |
43632998 |
aatctcaaccatcaatccatgatctgacggttccaattcacagcacgaaattcaacaatttcacacaatgtcagatcttaaccgttcattttaaatcaga |
43632899 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcctcatcc |
176 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
43632898 |
tggtgcagaacaactacagcgtgcaactgcgtgtaatatttacagcagaaaatcctcatcc |
43632838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 43997201 - 43997360
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
43997201 |
aatctcagccatcaattcatgatctgacggtttcaattcacagcacatatttcaacaatttcacacaatatcagatcataaccgttcatttcagatcaga |
43997300 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcctcatc |
175 |
Q |
| |
|
||||| | |||| ||||||| | ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
43997301 |
cggtgcaaaacaactacagcctacaactgcgtgtaatatttacagcagaaaatcctcatc |
43997360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 11692612 - 11692536
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctga-cggttccaattcacagcacagatttcaacaatttcacacaatgtcagat |
91 |
Q |
| |
|
|||||||||||||||||||| | |||| || ||| |||||||| || |||||||||||||||||||||| |||||| |
|
|
| T |
11692612 |
aatctcagccatcaatccataacctgatcgtttcaaattcacaataccgatttcaacaatttcacacaatatcagat |
11692536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 38953658 - 38953705
Alignment:
| Q |
128 |
gctacagcgtgcaactgcgtgtaaatattacagcaggaaatcctcatcc |
176 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||| |||| |
|
|
| T |
38953658 |
gctacagcgtgcaactgcgtgtaaat-ttacagcagcaaatcctaatcc |
38953705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 30198297 - 30198345
Alignment:
| Q |
128 |
gctacagcgtgcaactgcgtgtaaatattacagcaggaaatcctcatcct |
177 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||| ||||||| ||||| |
|
|
| T |
30198297 |
gctacagcgtgcaactgcgtgtaaat-ttacaccagcaaatcctaatcct |
30198345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 2e-72; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 14792387 - 14792541
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14792387 |
aatctcagccatcaatctatgatctgacggttccaattcacaacacaaatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
14792486 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcc |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14792487 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcagcaaatcc |
14792541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 4926151 - 4926305
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4926151 |
aatctcagccatcaatccatgatctaacggttctaattcgtagcacaaatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
4926250 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcc |
170 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4926251 |
cggtgtacaacagctacagcgtacaactgcgtgtaaatattacagcaggaaatcc |
4926305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 19681090 - 19680936
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || | |||| |||||||||||||||| ||| ||||||||| |||| ||||||||||| |
|
|
| T |
19681090 |
aatctcagccatcaatccatgatctgacggttccaattcacaacataaattttaacaatttcacacaatatcaaatcttaaccattcatttcagatcaga |
19680991 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcc |
170 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||| |||||||| |
|
|
| T |
19680990 |
cggtgtagaacagctacagcgtataactgcgggtaaatattacagctggaaatcc |
19680936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 41985396 - 41985279
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| |||| ||||||||||||| | |
|
|
| T |
41985396 |
aatctcagccatcaatccatgatccgacggttccaattcacaacacggatttcaacaatttcatacaatgtcagatcttgaccgctcacttcagatcaaa |
41985297 |
T |
|
| Q |
116 |
cggtgtagaacagctaca |
133 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
41985296 |
cggtgcagaacagctaca |
41985279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 7260302 - 7260418
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||| |||||| |||||| |||||||||| ||||||||||||||||||| |||| || |||||||| |
|
|
| T |
7260302 |
aatctcagccatcaatctatgatctgactgtttcaatttacagcaaagattttaacaatttcatacaatgtcagatcttaaccattcattttagatcaga |
7260401 |
T |
|
| Q |
116 |
cggtgtagaacagctac |
132 |
Q |
| |
|
|||| || ||||||||| |
|
|
| T |
7260402 |
cggtttaaaacagctac |
7260418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 1265010 - 1264952
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacgg-ttccaattcacagcacagatttcaacaa |
73 |
Q |
| |
|
|||||||||||||||| |||||||||| || ||| |||||||||||||||||| ||||| |
|
|
| T |
1265010 |
aatctcagccatcaattcatgatctgatggtttcaaattcacagcacagattttaacaa |
1264952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 1262089 - 1262042
Alignment:
| Q |
73 |
atttcacacaatgtcagatcttaaccgttcacttcagatcagacggtg |
120 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
1262089 |
atttcacacaatgttagatcttgaccgttcactttagatcggacggtg |
1262042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 39413356 - 39413406
Alignment:
| Q |
262 |
agcaatgcttgtatggtcacaacaacaattataattggtttagacacacat |
312 |
Q |
| |
|
|||||| |||||||||||||||| |||| |||| ||| ||||||||||||| |
|
|
| T |
39413356 |
agcaattcttgtatggtcacaaccacaaatatatttgttttagacacacat |
39413406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 12240717 - 12240563
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12240717 |
aatctcagccatcaatccatgatctgacggttccaattcacagcataaatttcaacaatttcacacaatgtcagatcttaatcgttcacttcagatcaga |
12240618 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcc |
170 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12240617 |
cggtgtagaacagctacaacgtgcaactgcgtgtaaatattacagcaggaaatcc |
12240563 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 49620734 - 49620580
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
49620734 |
aatctcagccatcaatccatgatctgacggttccaatttacagcacaaatttcaacaatttcacacaatgtcagatcttaacgtttcacttcagatcaga |
49620635 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcc |
170 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
49620634 |
cggtgtagaacaactacaacgtacaactgcatgtaaatattacagcaggaaatcc |
49620580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 23666635 - 23666795
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
|||||||| ||||||||||| ||| |||||||||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
23666635 |
aatctcagtcatcaatccataatccgacggttccaattcgcaacacggatttcaacaatttcacacaatgtcagatcttgaccgttcacttcaaatcaga |
23666734 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcctcatcc |
176 |
Q |
| |
|
||||| | |||| |||||| | ||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
23666735 |
cggtgcaaaacaactacagtggacaactgcctgtaatatttacagcaggaaatcctcatcc |
23666795 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 24851066 - 24851008
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaat |
74 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24851066 |
aatctcatccatcaatccatgatctgacggttccaattcacaacacagatttcaacaat |
24851008 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 14625634 - 14625577
Alignment:
| Q |
63 |
gatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcagacggtg |
120 |
Q |
| |
|
||||||||||||||||| || ||||||||||| ||| |||||| ||||| ||||||| |
|
|
| T |
14625634 |
gatttcaacaatttcacgcagtgtcagatcttgaccaatcactttagatcggacggtg |
14625577 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 277 - 451
Target Start/End: Complemental strand, 37728170 - 37727997
Alignment:
| Q |
277 |
gtcacaacaacaattataattggtttagacacacattgaaatgaaatgnnnnnnnccaatttattggtattatttattattacaaataatatgtattgtt |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37728170 |
gtcacaacaacaattataattggtttagacacacattcaaatgaaatgaaaaaa-ccaatttattggtattatttattattacaaataatatgtattgtt |
37728072 |
T |
|
| Q |
377 |
gtgttgtatatgtgccaaatgatttggatttatgtttgtcactatgtaagaattaccactgaaactaccccactg |
451 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37728071 |
gtgttgtatatatgccaaatgatttggatttatgtttgtcactatgtaagaattaccactgacactaccccactg |
37727997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 177 - 291
Target Start/End: Complemental strand, 37728296 - 37728182
Alignment:
| Q |
177 |
tgatatattatattactaaaagtagttctaaactttttgtataggcacaccccacacgcatcaacatacatccatccctaaaacaagcaatgcttgtatg |
276 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37728296 |
tgatatattatattactaaaagaagttctaaactttttgtataggcacaccccacacgcatcaacatacatccatccctaaaacaagcaatgcttgtatg |
37728197 |
T |
|
| Q |
277 |
gtcacaacaacaatt |
291 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37728196 |
gtcacaacaacaatt |
37728182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 13083640 - 13083801
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | | ||||| |||||||||| |
|
|
| T |
13083640 |
aatctcagcgatcaatccatgatctgatggttccaattcacagcacggatttcaacaatttcacacaatgtcagatctgagctgttcagttcagatcagg |
13083739 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgtgcaactgcgtgtaa-atattacagcaggaaatcctcatcc |
176 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
13083740 |
cggtgcagaacagctacagtgtgcaactgcgtgtaatattttacagcagaaaatcctcatcc |
13083801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 348 - 447
Target Start/End: Original strand, 37723810 - 37723909
Alignment:
| Q |
348 |
atttattattacaaataatatgtattgttgtgttgtatatgtgccaaatgatttggatttatgtttgtcactatgtaagaattaccactgaaactacccc |
447 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
37723810 |
atttattgttacaaataatatgtattgttgtgttgtatataagccaaatgatttggatttatgtttgtcgctatgtaagaattatgactgacactacccc |
37723909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 32612370 - 32612459
Alignment:
| Q |
24 |
ccatcaatccatgatctgacggttccaa-ttcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatc |
112 |
Q |
| |
|
|||||||||||||||| |||||| |||| |||||| ||| ||||||| ||||| ||| ||| | ||||||| ||||||||||||||||| |
|
|
| T |
32612370 |
ccatcaatccatgatccgacggtcccaaattcacatcacgaatttcaataattttacataatattagatcttgaccgttcacttcagatc |
32612459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 38992859 - 38992702
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38992859 |
aatctcagccatcaatctatgatctgaaggttgcaattcaaagcacagatttcaataatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
38992760 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcctca |
173 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38992759 |
cggtgtagaacaactacagcgtgcaactgcgtgtaaatattacagcaggaaatcctca |
38992702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 9e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 39305508 - 39305662
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39305508 |
aatctcagccatcaatccatgatctgacggttccaatttacagcacaaatttcaacaatttcatacaatgtcaaatcttaaccgttcacttcagatcaga |
39305607 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcc |
170 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39305608 |
cggtatagaacagctacggcgtgcaactgcgtgtaaatattacagcaggaaatcc |
39305662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 9625485 - 9625635
Alignment:
| Q |
20 |
tcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcagacggt |
119 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9625485 |
tcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgcaatgtcagatcttaaccgttcacttcagattagacggt |
9625584 |
T |
|
| Q |
120 |
gtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaatcc |
170 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9625585 |
gtagaacagctaaagcgtgcaactgcgtgtaaatattacagcagtaaatcc |
9625635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 17540114 - 17539992
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17540114 |
aatctcagccatcaatctatgatctgacggttccaattcacagcacaaatttcaacaatttcacacaatgtcaaatcttaaccgttcacttcagatcaga |
17540015 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgtg |
138 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
17540014 |
cggtgtagaacagctacagcgtg |
17539992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1603 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold1603
Description:
Target: scaffold1603; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 1032 - 911
Alignment:
| Q |
16 |
aatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcaga |
115 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1032 |
aatctcaaccatcaattcatgatctgacggttccaattcacagcacggatttcaacaattttacacaatgtcagatcttgaccgttcacttcagatcaga |
933 |
T |
|
| Q |
116 |
cggtgtagaacagctacagcgt |
137 |
Q |
| |
|
|||| ||||||| |||||||| |
|
|
| T |
932 |
cggtacagaacagttacagcgt |
911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 22000 - 21904
Alignment:
| Q |
24 |
ccatcaatccatgatctgacggttccaattcacagcacagattt---caacaatttcacacaatgtcagatcttaaccgttcacttcagatcagacg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||| ||||| ||||||| | |||||||||||||||| ||||||||||||| |
|
|
| T |
22000 |
ccatcaatccatgatctgacggttccaattcacaatacagattttaacaataattttacacaatattagatcttaaccgttcaattcagatcagacg |
21904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 191749 - 191806
Alignment:
| Q |
63 |
gatttcaacaatttcacacaatgtcagatcttaaccgttcacttcagatcagacggtg |
120 |
Q |
| |
|
||||||||||||||||| || ||||||||||| ||| |||||| ||||| ||||||| |
|
|
| T |
191749 |
gatttcaacaatttcacgcagtgtcagatcttgaccaatcactttagatcggacggtg |
191806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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