View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4100_low_4 (Length: 337)
Name: NF4100_low_4
Description: NF4100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4100_low_4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 190 - 337
Target Start/End: Complemental strand, 3119287 - 3119146
Alignment:
| Q |
190 |
caactgaaaaccctttccttcattgttatctcctcttccaaaaacagttcttctctccacatttaacagcaagatttcatagcaattttgaaacttgaaa |
289 |
Q |
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| T |
3119287 |
caactgaaaaccctttccttcattgttatctcctcttccaaaaacagttcttctctccacatttaacagcaagatttcatagcaattttg-------aaa |
3119195 |
T |
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| Q |
290 |
caagcaaggttagaaaattggg-ttttttgattcatttatggtttttct |
337 |
Q |
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| T |
3119194 |
caagcaaggttagaaaattgggtttttttgattcatttatggtttttct |
3119146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 3119434 - 3119316
Alignment:
| Q |
46 |
aacaaggactcccgcgaaaacagaacagcagaagaatttttctagtgacaccactcttaaatgacaaaaacacccttagattaaaatttaattcccaatt |
145 |
Q |
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| T |
3119434 |
aacaaggactcccgcgaa--cagaacagcagaagaatttttctagtgacacaactcttaaatgacaaaaacacccttaga-taaaatttaattcccaatt |
3119338 |
T |
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| Q |
146 |
tcaccaaaaacctttgcaatcg |
167 |
Q |
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| T |
3119337 |
tcaccaaaaacctttgcaatcg |
3119316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 197 - 313
Target Start/End: Original strand, 36012453 - 36012567
Alignment:
| Q |
197 |
aaaccctttccttcattgttatctcctcttccaaaaacagttcttctctccacatttaacagcaag--------atttcatagcaattttgaaacttgaa |
288 |
Q |
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| T |
36012453 |
aaaccctttccttcattgttatctcttcttccaaaaacagttct---ctccgcatttaacagcaagtttgcaagatttcaaagcaattttga-------a |
36012542 |
T |
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| Q |
289 |
acaagcaaggttagaaaattgggtt |
313 |
Q |
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| T |
36012543 |
acaagcaaggttagaaaattgggtt |
36012567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 36011353 - 36011411
Alignment:
| Q |
103 |
taaatgacaaaaacacccttagattaaaatttaattcccaatttcaccaaaaacctttg |
161 |
Q |
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| T |
36011353 |
taaatgacaaaaatacccttaaaataaaatttaattcccaatttcacccaaaatctttg |
36011411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 9142323 - 9142261
Alignment:
| Q |
103 |
taaatgacaaaaacacccttagattaaaatttaattcccaatttcaccaaaaacctttgcaatc |
166 |
Q |
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| T |
9142323 |
taaatgacaaaaacacccttaaat-aaaatttaatttccaatttcatccaaaacctttgcaatc |
9142261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 9142149 - 9142098
Alignment:
| Q |
284 |
ttgaaacaagcaaggttagaaaattgggttttttgattcatttatggtttttc |
336 |
Q |
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| T |
9142149 |
ttgaaacaaggaaggttagaaaattgtg-ttcttgattcatttatgttttttc |
9142098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 154
Target Start/End: Original strand, 32902109 - 32902138
Alignment:
| Q |
125 |
attaaaatttaattcccaatttcaccaaaa |
154 |
Q |
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| T |
32902109 |
attaaaatttaattcccaatttcaccaaaa |
32902138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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