View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4100_low_6 (Length: 323)
Name: NF4100_low_6
Description: NF4100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4100_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 48485843 - 48486134
Alignment:
| Q |
18 |
catctgaatggtgccaaatctttttgcaaatgccacagtattgtttcgatttaagtaactgtaagaacagaaccataaatgttgcaaattaaatttcagc |
117 |
Q |
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| T |
48485843 |
catctgaatggtgccaaatctttttgcaaatgccacagtattgtttcgatttaagtaactgtaagaacagaaccataaatgttgcaaattaaatttcagc |
48485942 |
T |
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| Q |
118 |
aatagataaattaaggcaaggaaataaagacatcttaaatgagtgattctctgaacctttgcacaagatttacaataatgctgaggagcacagcttgaat |
217 |
Q |
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| T |
48485943 |
aatagataaattaaggcaaggaaataaaaacatcttaaatgagtgattctctgaacctttgcacaagatttacaataatgctgaggagcacagcttgaat |
48486042 |
T |
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| Q |
218 |
ccttaatcttcttcatggttttgcatggcaacgtcaaaccacagccataacaagatattgtatcctgcataatttattcacacgataaaatt |
309 |
Q |
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| T |
48486043 |
ccttaatcttcttcatggttttgcatggcaacgtcaaaccacagccataacaagatattgtatcctgcataatttattcacacgataaaatt |
48486134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 10034777 - 10034681
Alignment:
| Q |
211 |
cttgaatccttaatcttcttcatggttttgcatggcaacgtcaaaccacagccataacaagatattgtatcctgcataatttattcacacgataaaa |
307 |
Q |
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| T |
10034777 |
cttgaatccttaaccttcttcatggttttgcatggcaacatcaaaccacagctagcacaacatctggcatcctgcacaatatattcactggataaaa |
10034681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 10034970 - 10034907
Alignment:
| Q |
18 |
catctgaatggtgccaaatctttttgcaaatgccacagtattgtttcgatttaagtaactgtaa |
81 |
Q |
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| T |
10034970 |
catctgaatggtgccaaatctttttgcaaattccacaatattgttttgattttcgtaactgtaa |
10034907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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