View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4100_low_7 (Length: 263)
Name: NF4100_low_7
Description: NF4100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4100_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 5500405 - 5500634
Alignment:
| Q |
20 |
cacctaacaaggttagttattcttgatatgtcttcttcaattaattcacatcacagcctaaaactcaagaagccaaatataacaatgcttgtgcaaaacc |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||||| |||||||||||||||||| |
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| T |
5500405 |
cacctaacaaggttagttattcttgatatgtcttcttcaattacttcagatcacagcctaaaacttaggaagccaaatattacaatgcttgtgcaaaact |
5500504 |
T |
|
| Q |
120 |
tcacggatatcacagaattatatctagacggtgtagcaatatctaccagcggagaggaatggggtcgtcctttatcttcgttagagggtcttcgtgttct |
219 |
Q |
| |
|
|||| |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
5500505 |
tcaccgatatcacagaattatatttagatggtgtagcaatatctgccagcggagaggaatggggtcgtgctttatcttcgttagaaggtcttcgtgttct |
5500604 |
T |
|
| Q |
220 |
gagcatgtcatcatgcaatctctctggacc |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
5500605 |
gagcatgtcatcatgcaatctctctggacc |
5500634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 5376885 - 5377117
Alignment:
| Q |
20 |
cacctaacaaggttagttattcttgatatgtcttcttcaattaattcacatcacagcctaaaactcaagaagccaaatataacaatgcttgtgcaaaacc |
119 |
Q |
| |
|
||||| |||||||| |||| ||||||| ||||||||| ||||| ||||| ||| ||||||||||| |||| ||||||||| |||||||||| |||||| |
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| T |
5376885 |
caccttacaaggttggttactcttgatttgtcttctttaattacttcacgtcaaagcctaaaacttgagaatccaaatatagaaatgcttgtgaaaaacc |
5376984 |
T |
|
| Q |
120 |
tcacggatatcacagaattatatctagacggtgtagcaatatctaccagcggagaggaatggggtcgtcctttatcttcgttagagggtcttcgtgttct |
219 |
Q |
| |
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| || |||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||| || |||||| |||||||| | |
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| T |
5376985 |
ttacagatatcacagaattgtatctagacggtgtagcaatatcttccagcggagatgaatggggtcgtgctttatctttattggagggtgttcgtgtttt |
5377084 |
T |
|
| Q |
220 |
gagcatgtcatcatgcaatctctctggacctat |
252 |
Q |
| |
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|| |||||| || ||||||||||| ||| |||| |
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| T |
5377085 |
gaccatgtcgtcgtgcaatctctcaggagctat |
5377117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 5352539 - 5352769
Alignment:
| Q |
20 |
cacctaacaaggttagttattcttgatatgtcttcttcaattaattcacatcacagcctaaaactcaagaagccaaatataacaatgcttgtgcaaaacc |
119 |
Q |
| |
|
||||| |||||||| |||| ||||||| ||||||||| ||||| ||||||||| | | ||||||| |||| ||||||||| | ||| || |||||| |
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| T |
5352539 |
caccttacaaggttggttactcttgatttgtcttctttaattacttcacatcagaacataaaacttgagaatccaaatatagagactcttttgaaaaacc |
5352638 |
T |
|
| Q |
120 |
tcacggatatcacagaattatatctagacggtgtagcaatatctaccagcggagaggaatggggtcgtcctttatcttcgttagagggtcttcgtgttct |
219 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||||||||||||| |||||||||| |||||| |||| |||||||||| | |||||||||||||| | |
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|
| T |
5352639 |
tcacagatatcacagaattgtatctagatggtgtagcaatatctgccagcggagaaaaatgggttcgtgctttatcttcactgaagggtcttcgtgtttt |
5352738 |
T |
|
| Q |
220 |
gagcatgtcatcatgcaatctctctggacct |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
5352739 |
gagcatgtcatcatgcaatctctctggacct |
5352769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 5391205 - 5391437
Alignment:
| Q |
20 |
cacctaacaaggttagttattcttgatatgtcttcttcaattaattcacatcacagcctaaaactcaagaagccaaatataacaatgcttgtgcaaaacc |
119 |
Q |
| |
|
||||| |||||||| |||| ||||||| |||| ||| | ||| ||||||||| ||||||||||| |||| |||||| | || |||||| |||||| |
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|
| T |
5391205 |
cacctcacaaggttggttactcttgatttgtcatctacgtttatttcacatcagagcctaaaacttgcaaagcaaaatatggcgatacttgtgaaaaacc |
5391304 |
T |
|
| Q |
120 |
tcacggatatcacagaattatatctagacggtgtagcaatatctaccagcggagaggaatggggtcgtcctttatcttcgttagagggtcttcgtgttct |
219 |
Q |
| |
|
|||| |||||| |||||| |||||||| ||||| ||||||| ||||||||||||||||||||||||| |||||||||| || ||||||||||||||| | |
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|
| T |
5391305 |
tcacaaatatcatagaattgtatctagatggtgtggcaatatgtaccagcggagaggaatggggtcgtgctttatcttctttggagggtcttcgtgtttt |
5391404 |
T |
|
| Q |
220 |
gagcatgtcatcatgcaatctctctggacctat |
252 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
5391405 |
aagcatgtcatcctgcaatctctctggacctat |
5391437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 78 - 252
Target Start/End: Original strand, 5410709 - 5410883
Alignment:
| Q |
78 |
taaaactcaagaagccaaatataacaatgcttgtgcaaaacctcacggatatcacagaattatatctagacggtgtagcaatatctaccagcggagagga |
177 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||| || ||||| ||||||||||||||||| ||||| |||||||| | || |||||||| |
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|
| T |
5410709 |
taaaacttgagaagccaaatataggaatgcttgtgcaaaaccttacagatattacagaattatatctagatggtgttgcaatatcagctaggggagagga |
5410808 |
T |
|
| Q |
178 |
atggggtcgtcctttatcttcgttagagggtcttcgtgttctgagcatgtcatcatgcaatctctctggacctat |
252 |
Q |
| |
|
|||||||| ||||||||||| || |||| ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
5410809 |
atggggtcatcctttatctttattgaaggggcttcgtgttttgagcatgtcatcatgcaatctctctggacctat |
5410883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 40 - 252
Target Start/End: Complemental strand, 5348502 - 5348290
Alignment:
| Q |
40 |
tcttgatatgtcttcttcaattaattcacatcacagcctaaaactcaagaagccaaatataacaatgcttgtgcaaaacctcacggatatcacagaatta |
139 |
Q |
| |
|
||||||| |||| |||||| ||| |||||||||| ||||||||| || ||||||||||| ||||| || | | ||||||||| ||||||||| | || |
|
|
| T |
5348502 |
tcttgatttgtcgtcttcatttacttcacatcacgtcctaaaacttgagcagccaaatatagcaatgtttattcgaaacctcacagatatcacaaagttg |
5348403 |
T |
|
| Q |
140 |
tatctagacggtgtagcaatatctaccagcggagaggaatggggtcgtcctttatcttcgttagagggtcttcgtgttctgagcatgtcatcatgcaatc |
239 |
Q |
| |
|
||| |||| ||||||||||||||| |||||||||| |||||||| ||| |||| ||||| || | ||| || |||||||||||||||||||||||||||| |
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|
| T |
5348402 |
tatttagatggtgtagcaatatctgccagcggagaagaatggggccgttctttgtcttcattggggggactccgtgttctgagcatgtcatcatgcaatc |
5348303 |
T |
|
| Q |
240 |
tctctggacctat |
252 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5348302 |
tctctggacctat |
5348290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 40 - 252
Target Start/End: Complemental strand, 5425822 - 5425610
Alignment:
| Q |
40 |
tcttgatatgtcttcttcaattaattcacatcacagcctaaaactcaagaagccaaatataacaatgcttgtgcaaaacctcacggatatcacagaatta |
139 |
Q |
| |
|
||||||| ||||||||||| ||| |||||||||| ||| ||||| |||| ||||||||| ||| || || ||||| |||| ||||||||| |||| |
|
|
| T |
5425822 |
tcttgatttgtcttcttcatttacttcacatcacgtcctcaaacttgagaatccaaatatagggatgtttatgaaaaacttcacagatatcacaaaattg |
5425723 |
T |
|
| Q |
140 |
tatctagacggtgtagcaatatctaccagcggagaggaatggggtcgtcctttatcttcgttagagggtcttcgtgttctgagcatgtcatcatgcaatc |
239 |
Q |
| |
|
|||||||| |||||||||||||| |||| ||||| |||||||||||| |||||| | | || | ||| ||||||||||| ||||||||||||||||||| |
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|
| T |
5425722 |
tatctagatggtgtagcaatatcagccagtggagaagaatggggtcgttctttatatccattggggggccttcgtgttctaagcatgtcatcatgcaatc |
5425623 |
T |
|
| Q |
240 |
tctctggacctat |
252 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5425622 |
tctctggacctat |
5425610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 252
Target Start/End: Original strand, 5399752 - 5399899
Alignment:
| Q |
103 |
aatgcttgtgcaaaacctcacggatatcacagaattatatctagacggtgtagcaatatctaccagcggagaggaatggggtcgtcctttatcttcgtta |
202 |
Q |
| |
|
|||| ||||| ||||||||| ||||||||| |||| |||||||| |||||||||||||| |||||| ||| |||||||||||| |||||| | | || |
|
|
| T |
5399752 |
aatgtttgtgaaaaacctca--gatatcacaaaattgtatctagatggtgtagcaatatcagccagcgcagaagaatggggtcgttctttatatccattg |
5399849 |
T |
|
| Q |
203 |
gagggtcttcgtgttctgagcatgtcatcatgcaatctctctggacctat |
252 |
Q |
| |
|
| ||| ||| |||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5399850 |
ggggggctttgtgtgctgagcatgtcatcaagcaatctctctggacctat |
5399899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 20327061 - 20327293
Alignment:
| Q |
20 |
cacctaacaaggttagttattcttgatatgtcttcttcaattaattcacatcacagcctaaaactcaagaagccaaatataacaatgcttgtgcaaaacc |
119 |
Q |
| |
|
||||| |||||||| |||| ||||||| ||||||||| ||||| ||||| ||| | ||||||||| |||| ||||||||| |||||||||| |||||| |
|
|
| T |
20327061 |
caccttacaaggttggttactcttgatttgtcttctttaattacttcacgtcaaaacctaaaacttgagaatccaaatatagaaatgcttgtgaaaaacc |
20327160 |
T |
|
| Q |
120 |
tcacggatatcacagaattatatctagacggtgtagcaatatctaccagcggagaggaatggggtcgtcctttatcttcgttagagggtcttcgtgttct |
219 |
Q |
| |
|
| || |||||||||||||| |||||||||||||||||||||||| |||||||||| || ||||||||| ||||||||| || |||||| |||||||| | |
|
|
| T |
20327161 |
ttacagatatcacagaattgtatctagacggtgtagcaatatcttccagcggagatgagtggggtcgtgctttatctttattggagggtgttcgtgtttt |
20327260 |
T |
|
| Q |
220 |
gagcatgtcatcatgcaatctctctggacctat |
252 |
Q |
| |
|
||||||||| || ||||||||||| |||||||| |
|
|
| T |
20327261 |
gagcatgtcgtcgtgcaatctctcaggacctat |
20327293 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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