View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4100_low_8 (Length: 251)
Name: NF4100_low_8
Description: NF4100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4100_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 39630170 - 39630401
Alignment:
| Q |
7 |
tgagatgaagcctagagcataccaaatatttttagaggtcgtataatctctaatacaatgaagaaggtttcttcagaagaggaacaacgaggatagatat |
106 |
Q |
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| T |
39630170 |
tgagatgaagcctagagcataccaaatatttttagaggtcgtataatctctaatacaatgaagaaggtttcttcagaagaggaacaacgaggatagatat |
39630269 |
T |
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| Q |
107 |
cgcttggagcaaggtttcagtggctta-gagggaaatgg--tatcgacaaagatgttaataaaagccattcaaacaagaaattttannnnnnnatgaagt |
203 |
Q |
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| T |
39630270 |
cgcttggagcaaggtttcagtggcttaggagggacatggtatatggacaaagatgttaataaaagccattcaaacaagaaattttatttttttatgaagt |
39630369 |
T |
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| Q |
204 |
tcgaggctcgaaatctaagaccatgagataaa |
235 |
Q |
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| T |
39630370 |
tcgaggctcgaaatctaagaccatgagataaa |
39630401 |
T |
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