View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4102_high_1 (Length: 303)

Name: NF4102_high_1
Description: NF4102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4102_high_1
NF4102_high_1
[»] chr1 (20 HSPs)
chr1 (11-288)||(11010714-11010991)
chr1 (18-286)||(10979155-10979423)
chr1 (18-286)||(11005033-11005301)
chr1 (18-288)||(10914420-10914690)
chr1 (18-283)||(10903260-10903525)
chr1 (17-288)||(11033011-11033282)
chr1 (18-286)||(11028618-11028888)
chr1 (30-286)||(11007571-11007827)
chr1 (83-286)||(10974142-10974345)
chr1 (17-189)||(10993814-10993986)
chr1 (165-286)||(10901567-10901688)
chr1 (17-98)||(10901483-10901564)
chr1 (119-238)||(8874127-8874246)
chr1 (125-244)||(9082592-9082711)
chr1 (21-87)||(10932804-10932870)
chr1 (119-238)||(8964444-8964563)
chr1 (183-286)||(9384221-9384324)
chr1 (119-247)||(8999595-8999723)
chr1 (120-286)||(9432848-9433014)
chr1 (197-241)||(9096865-9096909)
[»] chr3 (1 HSPs)
chr3 (193-249)||(9159598-9159654)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 11010714 - 11010991
Alignment:
Q  11 atcatcaggttttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtgtcgttctcaattgttacttcactt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11010714 atcatcaggttttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtgtcgttctcaattgttacttcactt 11010813  T
Q  111 ccatcatgaaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttccttctacttgccatctccatca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11010814 ccatcatgaaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttccttctacttgccatctccatca 11010913  T
Q  211 acaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggggccatat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11010914 acaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggggccatat 11010991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 10979155 - 10979423
Alignment:
Q  18 ggttttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtgtcgttctcaattgttacttcacttccatcat 117  Q
    |||||||||||||||||||| || ||||||||||||||||||||||| |  || ||||||||||||||||| || ||||| |||||||| ||||||||||    
T  10979155 ggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgttacttcccttccatcat 10979254  T
Q  118 gaaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacat 217  Q
    | |||  |||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  10979255 gtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacat 10979354  T
Q  218 cccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggggccat 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10979355 cccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggagccat 10979423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 11005301 - 11005033
Alignment:
Q  18 ggttttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtgtcgttctcaattgttacttcacttccatcat 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |  |||||||| | ||||||||| ||||||||||||||||||||||||||||    
T  11005301 ggttttgtctgtatacaccataaagccacaatcatcattttctttgccaatttcatttcttcatctgtgtcattctcaattgttacttcacttccatcat 11005202  T
Q  118 gaaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacat 217  Q
    | || | | |||||||||||||||| |||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11005201 gtaactgaccataaatccaaaaagggaaataaatttggcaagattgctcagccaatggattcaagttcttccttctacttgccatctccatcaacaacat 11005102  T
Q  218 cccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggggccat 286  Q
    |||||| ||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  11005101 cccaaagctatagacatcagctttgtgagatattgtgccgacatttctgtagaatagttcaggggccat 11005033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 10914420 - 10914690
Alignment:
Q  18 ggttttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtgtcgttctcaattgttacttcacttccatcat 117  Q
    |||||||| ||||||||||| || || |||||||||||||||||||| |  |||||||||||||||||||| || ||||| |||||||| ||||||||||    
T  10914420 ggttttgtttgtatacaccacaaagctacaatcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagttacttcccttccatcat 10914519  T
Q  118 gaaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacat 217  Q
    | |||  |||||||||||||||||| ||||||||||  || ||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  10914520 gtaatcgatcataaatccaaaaagggaaataaatttcactagattgatcagccaatgcattcaaattcttccttctgcttgccatctccattaacaacat 10914619  T
Q  218 cccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggggccatat 288  Q
    |||||| ||||||||||||||||||| |||||||||||| |||||||| ||||||| ||||||||||||||    
T  10914620 cccaaagctatatacatcagctttgtgagatattgtgccgacatttctatagaataattcaggggccatat 10914690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 10903260 - 10903525
Alignment:
Q  18 ggttttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtgtcgttctcaattgttacttcacttccatcat 117  Q
    |||||||| ||||||||||| || |||||  |||||||||||||||| |  |||||||||||||||||||| || ||||| |||||||| ||||||||||    
T  10903260 ggttttgtttgtatacaccacaaagccacggtcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagttacttcccttccatcat 10903359  T
Q  118 gaaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacat 217  Q
    | |||  |||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10903360 gtaatcgatcataaatccaaaaagggaaataaatttggctagattgttcggccaatgcattcaagttcttccttctacttgccatctccattaacaacat 10903459  T
Q  218 cccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggggc 283  Q
    |||||| ||||| ||||||||||||||||||||  | ||||||||||||||||| |||||||||||    
T  10903460 cccaaagctatagacatcagctttgtaagatatcattccaacatttctgtagaaaagttcaggggc 10903525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 11033011 - 11033282
Alignment:
Q  17 aggttttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtgtcgttctcaattgttacttcacttccatca 116  Q
    |||||| | ||| |||||||| || ||||| ||||||||||||||||| |  |||||||| |||| ||| || |||  |||||| | ||| ||||||||     
T  11033011 aggtttcgcctgaatacaccacaaagccactatcatcattttctttgccaatttcatttcatgatttgtatcattcagaattgtcatttcccttccatct 11033110  T
Q  117 tgaaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttccttctacttgccatctccatcaacaaca 216  Q
    || || | |||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11033111 tgtaactgatcataaacccaaaaagggaaataaatctggcttgattgatcagccaatgcattcaagttcttccttctatttgccatctccatcaacaaca 11033210  T
Q  217 tcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggggccatat 288  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  11033211 tcccaaaactataaacatcagctttgtaagatattgtgccgacatttcggtagaatagttcaggggccatat 11033282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 11028888 - 11028618
Alignment:
Q  18 ggttttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtgtcgttctcaattgtta--cttcacttccatc 115  Q
    |||||||| ||||||||||| || ||| || |||||||||||||||| |  |||||||||||||||||||| || ||||| | ||  |||| ||||||||    
T  11028888 ggttttgtttgtatacaccacaaagccgcagtcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagatatacttcccttccatc 11028789  T
Q  116 atgaaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttccttctacttgccatctccatcaacaac 215  Q
    ||| |||  |||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||| | |||||||||||| | || |||||||| ||||||    
T  11028788 atgtaatcgatcataaatccagaaagggaaataaatttggctagattgttcagccaatgcattctaattcttccttctattcgcaatctccattaacaac 11028689  T
Q  216 atcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggggccat 286  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11028688 atcccaaagctatagacatcagctttgtaagatattgtgccaacatttctatagaatagttcaggggccat 11028618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 30 - 286
Target Start/End: Original strand, 11007571 - 11007827
Alignment:
Q  30 atacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtgtcgttctcaattgttacttcacttccatcatgaaatttatcat 129  Q
    |||||||| || ||||| ||||||||||||||||| |  ||||| || |||| |||  | ||||||||||||| ||| |||||||| || || | |||||    
T  11007571 atacaccacaaagccactatcatcattttctttgccaatttcatctcatgatttgtagcattctcaattgttatttctcttccatcttgtaactgatcat 11007670  T
Q  130 aaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacatcccaaaactata 229  Q
    ||| ||||||||| |||||||  ||||| |||||  |||||||| ||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  11007671 aaacccaaaaagggaaataaacctggctagattgaccagccaatacatccaagttcttccttctatttgccatctccattaacaacatcccaaaactata 11007770  T
Q  230 tacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggggccat 286  Q
     |||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||    
T  11007771 aacatcagctttgtaagatatcgtgccgacatttcggtagaatagttcaggggccat 11007827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 83 - 286
Target Start/End: Original strand, 10974142 - 10974345
Alignment:
Q  83 tgtgtcgttctcaattgttacttcacttccatcatgaaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaag 182  Q
    |||||| || ||||| | |||||| ||||||||||| |||  |||||||||||| ||||| |||||||||||||| ||||| || ||||||||||||||     
T  10974142 tgtgtcattttcaatagatacttcccttccatcatgtaatcgatcataaatccagaaagggaaataaatttggctagattgatcggccaatgcattcaaa 10974241  T
Q  183 ttcttccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagggg 282  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  10974242 ttcttccttctactcgccatctccattaacaacatcccaaagctatagacatcagctttgtaagatattgtgccaatatttctgtagaacagttcagggg 10974341  T
Q  283 ccat 286  Q
    ||||    
T  10974342 ccat 10974345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 10993986 - 10993814
Alignment:
Q  17 aggttttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtgtcgttctcaattgttacttcacttccatca 116  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||| |  |||||||| | ||||||||| |||||||||||||||||||||||||||    
T  10993986 aggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtgtcattctcaattgttacttcacttccatca 10993887  T
Q  117 tgaaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttcc 189  Q
    || || | ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  10993886 tgtaactgatcataaatccaaaaaggaaaataaatttggctagattgctcagctaatgcattcaagttcttcc 10993814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 165 - 286
Target Start/End: Original strand, 10901567 - 10901688
Alignment:
Q  165 tcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||||||    
T  10901567 tcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacattccaaaactatagacatcagctttgtgagatattgtgccgacatttc 10901666  T
Q  265 tgtagaatagttcaggggccat 286  Q
    ||||||||| ||||||||||||    
T  10901667 tgtagaataattcaggggccat 10901688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 10901483 - 10901564
Alignment:
Q  17 aggttttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtgtcgttctcaatt 98  Q
    ||||||||||||  |||||||||| |||||||||||| |||||||||| |  |||||||| | ||||||||| |||||||||    
T  10901483 aggttttgtctgagtacaccataatgccacaatcatcgttttctttgccaatttcatttcttcatctgtgtcattctcaatt 10901564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 8874246 - 8874127
Alignment:
Q  119 aaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacatc 218  Q
    ||||| |||||||||||| |||||||||||||  || || || ||||||||    ||||| | ||| |||||| ||| ||||||| ||||||| | ||||    
T  8874246 aaattgatcataaatccataaaggaaaataaagctgacttgaatgctcagcttgggcatttaggtttttccttttacctgccatcaccatcaaaagcatc 8874147  T
Q  219 ccaaaactatatacatcagc 238  Q
    ||||||||||| ||||||||    
T  8874146 ccaaaactataaacatcagc 8874127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 244
Target Start/End: Complemental strand, 9082711 - 9082592
Alignment:
Q  125 atcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacatcccaaaa 224  Q
    |||||| |||||||| |||||||||| |||||| || ||||| |||   |  |||| ||| |||||  | ||||||||||||||||| | ||||||||||    
T  9082711 atcatatatccaaaagggaaaataaagttggcttgaatgctctgccttggtgttcaggtttttcctcttgcttgccatctccatcaaaagcatcccaaaa 9082612  T
Q  225 ctatatacatcagctttgta 244  Q
    ||||| |||||||| |||||    
T  9082611 ctataaacatcagccttgta 9082592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 10932804 - 10932870
Alignment:
Q  21 tttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtgt 87  Q
    ||||| ||||||||||| || ||||| ||||||||||||||||| |  |||||||||||||||||||    
T  10932804 tttgtttgtatacaccacaaagccacgatcatcattttctttgccaatttcatttcctgatctgtgt 10932870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 8964444 - 8964563
Alignment:
Q  119 aaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacatc 218  Q
    ||||| |||||||||||| |||||||||||||  || || || ||||| ||    ||||| | ||| |||||| ||| ||||||||||||||| | ||||    
T  8964444 aaattgatcataaatccataaaggaaaataaagctgacttgaatgctccgcttgggcatttaggtttttccttttacctgccatctccatcaaaagcatc 8964543  T
Q  219 ccaaaactatatacatcagc 238  Q
    ||||| ||||| ||||||||    
T  8964544 ccaaagctataaacatcagc 8964563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 9384221 - 9384324
Alignment:
Q  183 ttcttccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagggg 282  Q
    ||||||||| ||| |||||| |||||||| | ||| ||||| |||||||||||||| |||||||| | |   |||| |||| ||||||| |||||||| |    
T  9384221 ttcttccttttacctgccatttccatcaaaagcattccaaagctatatacatcagccttgtaagacactccaccaatatttttgtagaacagttcaggag 9384320  T
Q  283 ccat 286  Q
    ||||    
T  9384321 ccat 9384324  T

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Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 247
Target Start/End: Original strand, 8999595 - 8999723
Alignment:
Q  119 aaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacatc 218  Q
    ||||| |||||||||||| |||||||||||||  || || || ||||| ||     |||| | ||| |||||| ||| ||||||||||||||| | ||||    
T  8999595 aaattgatcataaatccataaaggaaaataaagctgacttgaatgctccgcttggacatttaggtttttccttttacctgccatctccatcaaaagcatc 8999694  T
Q  219 ccaaaactatatacatcagctttgtaaga 247  Q
    ||||| ||||| |||||||| || |||||    
T  8999695 ccaaagctataaacatcagccttataaga 8999723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 286
Target Start/End: Complemental strand, 9433014 - 9432848
Alignment:
Q  120 aatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacatcc 219  Q
    |||| ||||||||||||||| || ||||||| ||| || || ||||||||   || |||||| ||  | ||||||||||| || || ||||| | ||| |    
T  9433014 aattgatcataaatccaaaaggggaaataaagttgacttgaatgctcagcatgtgaattcaaatttcttcttctacttgcgatttcaatcaaaagcattc 9432915  T
Q  220 caaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcaggggccat 286  Q
    |||||||||| ||||| || ||||  |||||| | |||| ||||  |||||| | |||||| |||||    
T  9432914 caaaactatacacatcggccttgtgtgatattctcccaatattttggtagaacaattcaggagccat 9432848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 9096909 - 9096865
Alignment:
Q  197 tgccatctccatcaacaacatcccaaaactatatacatcagcttt 241  Q
    ||||||||||||||| | ||||||||| ||||| |||||||||||    
T  9096909 tgccatctccatcaaaagcatcccaaagctataaacatcagcttt 9096865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 9159598 - 9159654
Alignment:
Q  193 tacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagata 249  Q
    |||||||||| |||||||| | ||| ||||||||||| |||||||| ||||| ||||    
T  9159598 tacttgccatttccatcaaaagcattccaaaactataaacatcagccttgtatgata 9159654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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