View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4102_high_15 (Length: 317)

Name: NF4102_high_15
Description: NF4102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4102_high_15
NF4102_high_15
[»] chr3 (15 HSPs)
chr3 (70-244)||(30733612-30733786)
chr3 (184-244)||(47862466-47862526)
chr3 (184-253)||(47861769-47861837)
chr3 (184-244)||(11503679-11503739)
chr3 (184-244)||(48222326-48222386)
chr3 (184-244)||(48223008-48223068)
chr3 (184-243)||(53302951-53303010)
chr3 (184-244)||(6588547-6588606)
chr3 (184-243)||(1194099-1194158)
chr3 (184-250)||(11504367-11504433)
chr3 (184-225)||(53303639-53303680)
chr3 (161-237)||(16073645-16073720)
chr3 (90-136)||(49243262-49243308)
chr3 (192-225)||(25749094-25749127)
chr3 (200-252)||(6589330-6589382)
[»] chr7 (13 HSPs)
chr7 (70-244)||(22377239-22377413)
chr7 (184-249)||(33255717-33255782)
chr7 (184-244)||(47942693-47942753)
chr7 (184-244)||(47948123-47948183)
chr7 (184-244)||(7331113-7331173)
chr7 (184-244)||(7331866-7331926)
chr7 (184-244)||(47942013-47942072)
chr7 (184-244)||(33256411-33256470)
chr7 (192-244)||(34151599-34151651)
chr7 (192-244)||(34175473-34175525)
chr7 (192-244)||(31724186-31724238)
chr7 (184-249)||(48843174-48843240)
chr7 (197-244)||(16959613-16959658)
[»] chr6 (13 HSPs)
chr6 (184-244)||(23950054-23950114)
chr6 (184-249)||(305650-305715)
chr6 (184-244)||(304975-305035)
chr6 (184-244)||(644102-644162)
chr6 (184-244)||(33775570-33775630)
chr6 (184-243)||(33776251-33776310)
chr6 (184-244)||(644783-644843)
chr6 (184-244)||(26275430-26275490)
chr6 (184-243)||(19803381-19803440)
chr6 (187-244)||(22509757-22509812)
chr6 (184-230)||(26276182-26276228)
chr6 (189-244)||(8208113-8208167)
chr6 (171-230)||(23949144-23949202)
[»] chr4 (18 HSPs)
chr4 (184-244)||(39232105-39232165)
chr4 (184-244)||(4206208-4206268)
chr4 (184-244)||(4206890-4206950)
chr4 (184-244)||(51539823-51539883)
chr4 (184-244)||(51540512-51540572)
chr4 (184-249)||(49603414-49603479)
chr4 (184-244)||(2520310-2520370)
chr4 (184-244)||(29379724-29379784)
chr4 (248-296)||(45527023-45527071)
chr4 (184-244)||(49604099-49604159)
chr4 (184-244)||(2519559-2519618)
chr4 (184-244)||(29380477-29380537)
chr4 (192-244)||(39232801-39232852)
chr4 (192-242)||(46513686-46513736)
chr4 (184-247)||(25699285-25699351)
chr4 (187-244)||(26355227-26355283)
chr4 (198-243)||(2528689-2528733)
chr4 (190-222)||(441328-441360)
[»] chr8 (14 HSPs)
chr8 (184-249)||(44445964-44446029)
chr8 (184-244)||(5157234-5157294)
chr8 (184-244)||(28824126-28824186)
chr8 (184-244)||(29555509-29555569)
chr8 (184-244)||(38376208-38376268)
chr8 (184-244)||(5156553-5156613)
chr8 (184-244)||(28824807-28824866)
chr8 (184-244)||(29556197-29556257)
chr8 (184-244)||(39774320-39774380)
chr8 (184-244)||(44446649-44446709)
chr8 (184-244)||(5157978-5158038)
chr8 (184-244)||(39773567-39773627)
chr8 (192-244)||(14857949-14858001)
chr8 (200-244)||(38376912-38376955)
[»] chr2 (11 HSPs)
chr2 (184-249)||(22424724-22424789)
chr2 (184-244)||(1389089-1389149)
chr2 (184-244)||(29982906-29982966)
chr2 (184-244)||(37645160-37645220)
chr2 (184-244)||(21647602-21647662)
chr2 (184-244)||(37644407-37644467)
chr2 (184-244)||(21648355-21648415)
chr2 (184-244)||(22424035-22424095)
chr2 (184-244)||(29982153-29982213)
chr2 (192-249)||(15167824-15167881)
chr2 (184-244)||(15321814-15321875)
[»] chr5 (13 HSPs)
chr5 (184-244)||(4276254-4276314)
chr5 (184-244)||(31230120-31230180)
chr5 (184-244)||(2600834-2600893)
chr5 (184-244)||(3341587-3341647)
chr5 (184-244)||(3358496-3358556)
chr5 (184-244)||(4275566-4275626)
chr5 (184-244)||(31229431-31229491)
chr5 (184-244)||(2601522-2601581)
chr5 (184-244)||(3342340-3342400)
chr5 (184-244)||(3359249-3359309)
chr5 (184-239)||(5233770-5233825)
chr5 (192-244)||(11377286-11377336)
chr5 (192-244)||(11376943-11376995)
[»] chr1 (18 HSPs)
chr1 (184-244)||(36180413-36180473)
chr1 (184-244)||(47708512-47708572)
chr1 (184-253)||(9087682-9087751)
chr1 (192-249)||(11625984-11626041)
chr1 (184-249)||(35813290-35813354)
chr1 (184-244)||(249684-249744)
chr1 (184-244)||(250366-250425)
chr1 (184-244)||(9088444-9088504)
chr1 (184-244)||(35814033-35814093)
chr1 (184-244)||(45880757-45880817)
chr1 (184-244)||(45881510-45881570)
chr1 (187-244)||(11625288-11625344)
chr1 (184-239)||(42308899-42308954)
chr1 (184-244)||(32516812-32516872)
chr1 (184-244)||(32517565-32517625)
chr1 (184-244)||(36179718-36179777)
chr1 (185-242)||(27039099-27039155)
chr1 (192-244)||(51590774-51590826)
[»] scaffold0181 (2 HSPs)
scaffold0181 (184-242)||(18064-18122)
scaffold0181 (184-244)||(17311-17371)
[»] scaffold0178 (1 HSPs)
scaffold0178 (197-244)||(5162-5209)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 70 - 244
Target Start/End: Complemental strand, 30733786 - 30733612
Alignment:
Q  70 ccttttatatatagctacctgcagtacggtatgtatataccggaggtttaaaacagaaatctgaaaactgtgcatccgatagataccctccggaggcacc 169  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  30733786 ccttttatatatagctacctgcagtacggtatgtatatactggaggtttaaaacagaaatctgaaaactgtgcatccggtagatacactccggaggcacc 30733687  T
Q  170 aatttttaaataccaaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30733686 aatttttaaataccaaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 30733612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 47862466 - 47862526
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47862466 aaggttatttttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 47862526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 47861837 - 47861769
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatcatccatttt 253  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  47861837 aaggttatttttgtatttttagggggcctaaagagatattgg-ggggcctaaaaagcaatcttccatttt 47861769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 11503739 - 11503679
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11503739 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 11503679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 48222386 - 48222326
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48222386 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 48222326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 48223008 - 48223068
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48223008 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 48223068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 53303010 - 53302951
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaat 243  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  53303010 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 53302951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 6588606 - 6588547
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  6588606 aaggttatttttgtatttttagggggcctaaagagatatt-gagggggctaaaaagcaatc 6588547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 1194158 - 1194099
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaat 243  Q
    ||||||| |||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  1194158 aaggttatttttgtatttttggggggcctaaagagatattgagggggcctaaaaagcaat 1194099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 11504367 - 11504433
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatcatccat 250  Q
    ||||||| ||||||||||||| |||||||||| ||||||||| || ||||||||||||||| |||||    
T  11504367 aaggttatttttgtatttttaaggggcctaaaaagatattgggggagcctaaaaagcaatcttccat 11504433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 53303639 - 53303680
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattgg 225  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  53303639 aaggttatttttgtatttttagggggcctaaagagatattgg 53303680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 16073720 - 16073645
Alignment:
Q  161 ggaggcaccaatttttaaataccaaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaa 237  Q
    |||||| ||||||  ||| ||| |||||||||||||||||||| ||||||| ||||||||||| | |||||||||||    
T  16073720 ggaggctccaattcataagtacaaaggttaattttgtatttttggggggcccaaagagatatttg-ggggcctaaaa 16073645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 49243308 - 49243262
Alignment:
Q  90 gcagtacggtatgtatataccggaggtttaaaacagaaatctgaaaa 136  Q
    |||||||||||| ||||||||||| |||||||| |||||| ||||||    
T  49243308 gcagtacggtatatatataccggaagtttaaaaaagaaatttgaaaa 49243262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 25749094 - 25749127
Alignment:
Q  192 ttttgtatttttagggggcctaaagagatattgg 225  Q
    |||||||||||||||||||||||| |||||||||    
T  25749094 ttttgtatttttagggggcctaaaaagatattgg 25749127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 6589330 - 6589382
Alignment:
Q  200 ttttagggggcctaaagagatattggaggggcctaaaaagcaatcatccattt 252  Q
    ||||| ||||||||||||||||| |  ||||||||||| |||||| |||||||    
T  6589330 ttttacggggcctaaagagatatcgagggggcctaaaaggcaatcctccattt 6589382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 70 - 244
Target Start/End: Original strand, 22377239 - 22377413
Alignment:
Q  70 ccttttatatatagctacctgcagtacggtatgtatataccggaggtttaaaacagaaatctgaaaactgtgcatccgatagataccctccggaggcacc 169  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||| || ||||||||||    
T  22377239 ccttttatatatagctacctgcagtacggtatgtatatacaggaggtttaaaacagaaatctaaaaactgtgcatccggtagatacacttcggaggcacc 22377338  T
Q  170 aatttttaaataccaaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22377339 aatttttaaataccaaagttaattttgtatttttagggggcctaaagagatactggaggggcctaaaaagcaatc 22377413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 33255782 - 33255717
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatcatcca 249  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  33255782 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcttcca 33255717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 47942693 - 47942753
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47942693 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 47942753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 47948123 - 47948183
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47948123 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 47948183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 7331173 - 7331113
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  7331173 aaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 7331113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 7331866 - 7331926
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  7331866 aaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 7331926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 47942072 - 47942013
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47942072 aaggttatttttgtatttttagggggcctaaagagatattgg-ggggcctaaaaagcaatc 47942013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 33256411 - 33256470
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  33256411 aaggttatttttgtacttttagggggcctaaagagatattgg-ggggcctaaaaagcaatc 33256470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 34151651 - 34151599
Alignment:
Q  192 ttttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    |||||||| ||||||||||||||||||||||||  ||||||||||||||||||    
T  34151651 ttttgtatctttagggggcctaaagagatattgagggggcctaaaaagcaatc 34151599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 34175473 - 34175525
Alignment:
Q  192 ttttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    |||||||| ||||||||||||||||||||||||  ||||||||||||||||||    
T  34175473 ttttgtatctttagggggcctaaagagatattgagggggcctaaaaagcaatc 34175525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 31724186 - 31724238
Alignment:
Q  192 ttttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||||||||| |||||||||| ||||||||  ||||||||||||||||||    
T  31724186 ttttgtatttttaaggggcctaaatagatattgagggggcctaaaaagcaatc 31724238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 48843240 - 48843174
Alignment:
Q  184 aaggttaatttt-gtatttttagggggcctaaagagatattggaggggcctaaaaagcaatcatcca 249  Q
    ||||||| |||| |||||||||||||||||||||||||||||  || | ||| ||||||||| ||||    
T  48843240 aaggttatttttcgtatttttagggggcctaaagagatattgagggtggctataaagcaatcctcca 48843174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 16959613 - 16959658
Alignment:
Q  197 tatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||||||| ||||||||||||||||  ||||| ||||||||||||    
T  16959613 tatttttagggagcctaaagagatattg--ggggcgtaaaaagcaatc 16959658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 23950054 - 23950114
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23950054 aaggttaattttgtatttttagggggcctaaagagatattggaggagcctaaaaagcaatc 23950114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 305650 - 305715
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatcatcca 249  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  305650 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcttcca 305715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 305035 - 304975
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  305035 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 304975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 644162 - 644102
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  644162 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 644102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 33775630 - 33775570
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33775630 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 33775570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 33776251 - 33776310
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaat 243  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33776251 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 33776310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 644783 - 644843
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  644783 aaggttatttttgtatttttagggggcctaaagagatattgggggggtctaaaaagcaatc 644843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 26275490 - 26275430
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||| ||||||||||||||||||  ||||||||||||||||||    
T  26275490 aaggttatttttgtatttttagagggcctaaagagatattgagggggcctaaaaagcaatc 26275430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 19803440 - 19803381
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaat 243  Q
    ||||||| ||||||||||| |||||||||||||||||||||  |||||||||||||||||    
T  19803440 aaggttatttttgtattttcagggggcctaaagagatattgagggggcctaaaaagcaat 19803381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 22509812 - 22509757
Alignment:
Q  187 gttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    |||| |||||||||||||||||| ||||||||||||||  ||||||||||||||||||    
T  22509812 gttatttttgtatttttagggggtctaaagagatattg--ggggcctaaaaagcaatc 22509757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 26276182 - 26276228
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggagggg 230  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||    
T  26276182 aaggttatttttgtatttttaggggacctaaagagatattggggggg 26276228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 8208167 - 8208113
Alignment:
Q  189 taattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    |||||||| |||||||||| ||||||||||| | ||| ||||||||||||||||||    
T  8208167 taattttggatttttagggagcctaaagagaaactgg-ggggcctaaaaagcaatc 8208113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 23949202 - 23949144
Alignment:
Q  171 atttttaaataccaaggttaattttgtatttttagggggcctaaagagatattggagggg 230  Q
    |||||||| ||  ||||||||||||||||||||| |||| ||||||||||||||| ||||    
T  23949202 atttttaattataaaggttaattttgtatttttaagggg-ctaaagagatattggggggg 23949144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 39232165 - 39232105
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39232165 aaggttatttttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 39232105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 4206268 - 4206208
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4206268 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 4206208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 4206890 - 4206950
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4206890 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 4206950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 51539883 - 51539823
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  51539883 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 51539823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 51540512 - 51540572
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  51540512 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 51540572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 49603479 - 49603414
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatcatcca 249  Q
    ||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||    
T  49603479 aaggttatttttgtatttttagggggcttaaagagatattgggggggcctaaaaagcaatcttcca 49603414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 2520310 - 2520370
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  2520310 aaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 2520370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 29379784 - 29379724
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  29379784 aaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 29379724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 45527071 - 45527023
Alignment:
Q  248 cattttgaaatgcttttctgcatctacataaacccatttccttaaccag 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45527071 cattttgaaatgcttttctgcatctacataaacccatttccttaaccag 45527023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 49604099 - 49604159
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  49604099 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctgaaaagcaatc 49604159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 2519618 - 2519559
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  2519618 aaggttatttttgtatttttaaggggcctaaagagatattgga-gggcctaaaaagcaatc 2519559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 29380477 - 29380537
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| ||||||||||||||||| |||||||||||||||  ||||||||||||||||||    
T  29380477 aaggttatttttgtatttttaggggacctaaagagatattgagggggcctaaaaagcaatc 29380537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 39232801 - 39232852
Alignment:
Q  192 ttttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39232801 ttttgtatttttagggggcctaaagagatattgg-ggggcctaaaaagcaatc 39232852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 46513686 - 46513736
Alignment:
Q  192 ttttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaa 242  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  46513686 ttttgtatttttagggggcctaaagagatatttggggggcctaaaaagcaa 46513736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 25699351 - 25699285
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatatt---ggaggggcctaaaaagcaatcatc 247  Q
    ||||||| ||| ||||||||||||||||||||||||||||   ||||||| ||||||||||||||||    
T  25699351 aaggttattttcgtatttttagggggcctaaagagatattgagggaggggtctaaaaagcaatcatc 25699285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 26355283 - 26355227
Alignment:
Q  187 gttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    |||||||||||||| |||||||||||||| ||||||||| | ||||||||||||||||    
T  26355283 gttaattttgtattattagggggcctaaacagatattgg-gaggcctaaaaagcaatc 26355227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 2528689 - 2528733
Alignment:
Q  198 atttttagggggcctaaagagatattggaggggcctaaaaagcaat 243  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||    
T  2528689 atttttaggggacctaaagagatattag-ggggcctaaaaagcaat 2528733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 441360 - 441328
Alignment:
Q  190 aattttgtatttttagggggcctaaagagatat 222  Q
    ||||||||| |||||||||||||||||||||||    
T  441360 aattttgtaattttagggggcctaaagagatat 441328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 44446029 - 44445964
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatcatcca 249  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  44446029 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcttcca 44445964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 5157234 - 5157294
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5157234 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 5157294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 28824186 - 28824126
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28824186 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 28824126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 29555569 - 29555509
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29555569 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 29555509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 38376268 - 38376208
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38376268 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 38376208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 5156613 - 5156553
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  5156613 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagaaatc 5156553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 28824807 - 28824866
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28824807 aaggttatttttgtatttttagggggcctaaagagatattgg-ggggcctaaaaagcaatc 28824866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 29556197 - 29556257
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  29556197 aaggttatttttgtatttttagggggcctaaagagatattggggggacctaaaaagcaatc 29556257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 39774320 - 39774380
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  39774320 aaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 39774380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 44446649 - 44446709
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  44446649 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctgaaaagcaatc 44446709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 5157978 - 5158038
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| ||||||||||||||| |||||||||||||||||  ||||||||||||||||||    
T  5157978 aaggttatttttgtatttttaggaggcctaaagagatattgagggggcctaaaaagcaatc 5158038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 39773627 - 39773567
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| ||||| |||||||||||||||||||||||||||  ||||||||||||||||||    
T  39773627 aaggttatttttgaatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 39773567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 14857949 - 14858001
Alignment:
Q  192 ttttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    |||||||| ||||||||||||||||||||||||  ||||||||||||||||||    
T  14857949 ttttgtatctttagggggcctaaagagatattgagggggcctaaaaagcaatc 14858001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 38376912 - 38376955
Alignment:
Q  200 ttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  38376912 ttttagggggcctaaagagatattgg-ggggcctaaaaagcaatc 38376955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 22424724 - 22424789
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatcatcca 249  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  22424724 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcttcca 22424789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 1389089 - 1389149
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1389089 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 1389149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 29982906 - 29982966
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29982906 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 29982966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 37645160 - 37645220
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37645160 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 37645220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 21647662 - 21647602
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  21647662 aaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 21647602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 37644467 - 37644407
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  37644467 aaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 37644407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 21648355 - 21648415
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||| ||||||||||||||  ||||||||||||||||||    
T  21648355 aaggttatttttgtatttttagggggtctaaagagatattgagggggcctaaaaagcaatc 21648415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 22424095 - 22424035
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| ||||||||||||| |||||||||||||||||||| || |||||||||||||||    
T  22424095 aaggttatttttgtatttttaaggggcctaaagagatattgggggagcctaaaaagcaatc 22424035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 29982213 - 29982153
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  29982213 aaggttatttttgtatttttagggggcctaaagagatattgagagggcctaaaaagcaatc 29982153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 15167824 - 15167881
Alignment:
Q  192 ttttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatcatcca 249  Q
    |||||||| ||||||||||||||||||||||||  |||| ||||||||||||| ||||    
T  15167824 ttttgtatctttagggggcctaaagagatattgagggggtctaaaaagcaatcctcca 15167881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 15321875 - 15321814
Alignment:
Q  184 aaggttaattttgt-atttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||| |||||||||||||||||||||||||||  ||||| ||||||||||||    
T  15321875 aaggttatttttgttatttttagggggcctaaagagatattgagggggcttaaaaagcaatc 15321814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 4276254 - 4276314
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4276254 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 4276314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 31230120 - 31230180
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31230120 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 31230180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 2600893 - 2600834
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2600893 aaggttatttttgtatttttagggggcctaaagagatattgg-ggggcctaaaaagcaatc 2600834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 3341647 - 3341587
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  3341647 aaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 3341587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 3358556 - 3358496
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  3358556 aaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 3358496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 4275626 - 4275566
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  4275626 aaggttatttttgtatttttagggggcctaaagagatattaggggggcctaaaaagcaatc 4275566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 31229491 - 31229431
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  31229491 aaggttatttttgtacttttagggggcctaaagagatattgggggggcctaaaaagcaatc 31229431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 2601522 - 2601581
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  2601522 aaggttatttttgtatttttaggaggcctaaagagatattgg-ggggcctaaaaagcaatc 2601581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 3342340 - 3342400
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||| ||||||||||||||  ||||||||||||||||||    
T  3342340 aaggttatttttgtatttttagggggtctaaagagatattgagggggcctaaaaagcaatc 3342400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 3359249 - 3359309
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||| ||||||||||||||  ||||||||||||||||||    
T  3359249 aaggttatttttgtatttttagggggtctaaagagatattgagggggcctaaaaagcaatc 3359309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 5233825 - 5233770
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaag 239  Q
    ||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||    
T  5233825 aaggttatttttgtatttttagagggcctaaaaagatattggaggggcctaaaaag 5233770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 11377336 - 11377286
Alignment:
Q  192 ttttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    |||||||||||||||||| | ||||||||||||  ||||||||||||||||||    
T  11377336 ttttgtatttttagggggaccaaagagatattg--ggggcctaaaaagcaatc 11377286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 11376995 - 11376943
Alignment:
Q  192 ttttgtatttttagggggc-ctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||||||||||||||  | ||||||||||||| ||||||||||||||||||    
T  11376995 ttttgtatttttaggggggaccaaagagatattgg-ggggcctaaaaagcaatc 11376943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 36180413 - 36180473
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36180413 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 36180473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 47708512 - 47708572
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47708512 aaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 47708572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 9087751 - 9087682
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatcatccatttt 253  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||| || |||||    
T  9087751 aaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatcctctatttt 9087682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 11625984 - 11626041
Alignment:
Q  192 ttttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatcatcca 249  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  11625984 ttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatcttcca 11626041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 35813354 - 35813290
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatcatcca 249  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  35813354 aaggttatttttgtatttttagggggcctaaagagatatt-gaggggcctaaaaagcaatcctcca 35813290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 249744 - 249684
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  249744 aaggttatttttgtatttttagggggtctaaagagatattgggggggcctaaaaagcaatc 249684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 250366 - 250425
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  250366 aaggttatttttgtatttttagggggcctaaagagatattgg-ggggcctaaaaagcaatc 250425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 9088444 - 9088504
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  9088444 aaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 9088504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 35814033 - 35814093
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  35814033 aaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 35814093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 45880817 - 45880757
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  45880817 aaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 45880757  T

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Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 45881510 - 45881570
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  45881510 aaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 45881570  T

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Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 11625344 - 11625288
Alignment:
Q  187 gttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11625344 gttatttttgtatttttagggggcctaaagagatattgg-ggggcctaaaaagcaatc 11625288  T

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Target: chr1; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 42308899 - 42308954
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaag 239  Q
    ||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||    
T  42308899 aaggttatttttgtatttttaggaggcctaaaaagatattggaggggcctaaaaag 42308954  T

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Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 32516872 - 32516812
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| ||||||||||||||||| | |||||||||||||  ||||||||||||||||||    
T  32516872 aaggttatttttgtatttttaggggacttaaagagatattgagggggcctaaaaagcaatc 32516812  T

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Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 32517565 - 32517625
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||  |||||||||||||    
T  32517565 aaggttatttttgtatttttagggggcctaaagagatattgaggggttctaaaaagcaatc 32517625  T

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Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 36179777 - 36179718
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| ||||||||||||||| |||||||||||||||||| ||| ||||||||||||||    
T  36179777 aaggttatttttgtatttttaggaggcctaaagagatattgg-gggacctaaaaagcaatc 36179718  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 27039099 - 27039155
Alignment:
Q  185 aggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaa 242  Q
    |||||||||| ||||||||||||||| |||| ||||||||| |||||||||| |||||    
T  27039099 aggttaatttcgtatttttagggggcttaaaaagatattgg-ggggcctaaagagcaa 27039155  T

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Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 51590774 - 51590826
Alignment:
Q  192 ttttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||||||| ||||||||||||||||  |||| |||||||||||||    
T  51590774 ttttgtagttttagggtgcctaaagagatattgtgggggtctaaaaagcaatc 51590826  T

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Target: scaffold0181 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 18064 - 18122
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaa 242  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  18064 aaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaa 18122  T

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Target: scaffold0181; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 17371 - 17311
Alignment:
Q  184 aaggttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    ||||||| |||| ||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  17371 aaggttatttttatatttttagggggcctaaagaaatattgagggggcctaaaaagcaatc 17311  T

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Target: scaffold0178 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 5162 - 5209
Alignment:
Q  197 tatttttagggggcctaaagagatattggaggggcctaaaaagcaatc 244  Q
    |||||||| ||| |||||||||||||||  ||||||||||||||||||    
T  5162 tatttttatgggtcctaaagagatattgatggggcctaaaaagcaatc 5209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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