View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4102_high_18 (Length: 305)
Name: NF4102_high_18
Description: NF4102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4102_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 42570157 - 42570388
Alignment:
| Q |
30 |
ttttctactcaaaccctaatttctcactactctaatttt-ttcaattatattgtattctgcagacattaacattacattacaacaatttaattaatacgc |
128 |
Q |
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| T |
42570157 |
ttttctactcaaaccctaatttctcactactctaatttttttcaattatattgtattctgcaaacattaacattacattacaacaatttaattaatacgc |
42570256 |
T |
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| Q |
129 |
atagcagtgatgaatgaatcaagaaatttcatttcatagtaataattaggatttgaaagattataaatgacattacctaagttaagctctgaattgtgtt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42570257 |
atagcagtgatgaatgaatcaagaaatttcatttcatagtaataattaggatttgaaagattataaatgacattacctaagttaagctctgaattgtgtt |
42570356 |
T |
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| Q |
229 |
cgtcttcttcacttcatttgtcgttcactgac |
260 |
Q |
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||||||||||||||||||||| |||||||||| |
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| T |
42570357 |
cgtcttcttcacttcatttgttgttcactgac |
42570388 |
T |
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