View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4102_high_3 (Length: 399)
Name: NF4102_high_3
Description: NF4102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4102_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 34899631 - 34899335
Alignment:
| Q |
1 |
ctcctaataactaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaagtcttagcagacacttct |
100 |
Q |
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| T |
34899631 |
ctcctaataactaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaagtcttagcagacacttct |
34899532 |
T |
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| Q |
101 |
tcatagannnnnnnngttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagtttaagaaggatccaaatagcaccac |
200 |
Q |
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| T |
34899531 |
tcatagattttttttgttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagtttaagaaggatccaaatagcaccac |
34899432 |
T |
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| Q |
201 |
aagaaacaattagagaagtgtcaaaacaaaagggnnnnnnnnttcattgatgaattgtatagccctgatttttaaaattgggcaagactcttctgat |
297 |
Q |
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| T |
34899431 |
aagaaacaattagagaagtgtcaaaacaaaagggaaaaaaaattcattgatgaattgtatagccctgatttttagaattgagcaagactcttctgat |
34899335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 399
Target Start/End: Complemental strand, 34899294 - 34899233
Alignment:
| Q |
338 |
tactataataactagttttttacaaggttaaagtaaacgtatctgcaaacttatgttgaaat |
399 |
Q |
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|||||||||||| |||||||||| |||||||| |||||||||||| |||||||||||||||| |
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| T |
34899294 |
tactataataaccagttttttacgaggttaaaataaacgtatctgtaaacttatgttgaaat |
34899233 |
T |
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