View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4103_high_3 (Length: 433)
Name: NF4103_high_3
Description: NF4103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4103_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 415
Target Start/End: Original strand, 3923724 - 3924139
Alignment:
| Q |
10 |
atatgaaagatgcaggtgggtgaattctaattttcttcctaaatatgacataatggtatttggatggttcctcatctatgcatttgcaattgtaattttg |
109 |
Q |
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| T |
3923724 |
atatgaaagatgcaggtgggtgaattctaattttcttcctaaatatgacataatggtatttggatggttcctcatctatgcatttgcaattgtaattttg |
3923823 |
T |
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| Q |
110 |
ttatagatagagtgggaagtcacattgtaagaaatagagtttacgtgtggttgatgaagtttctacatgaaacttgctgtttttgtttggtttgggctca |
209 |
Q |
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| T |
3923824 |
ttatagatagagtgggaagtcacattgtaagaaatagagtttacgtgtggttgatgaagtttctacatgaaacttgctgtttttgtttggtttgggctca |
3923923 |
T |
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| Q |
210 |
tcttaggactaaataatattttc-agtggaataaattaagtttggaagatttctcttcaagccctttcattgt-------ttataagccctaaacaagtt |
301 |
Q |
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| T |
3923924 |
tcttgggactaaataatattttctggtggaataaattaagtttggaagatttctcttctagccctttcattgtttataaattataagccctaaacaagtt |
3924023 |
T |
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| Q |
302 |
ttaaaatatagaactttttgtttatgaatatgtaactctttc--nnnnnnnggtggaatgaatatgtaacttttttcttatcaaacttagtaaacatata |
399 |
Q |
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| T |
3924024 |
ttaaaatatagaactttttgtttatgaatatgtaactctttctttttttttggtggaatgaatatgtaacttttttcttatcaaacttactaaacatata |
3924123 |
T |
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| Q |
400 |
ttattttcgctattag |
415 |
Q |
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| T |
3924124 |
ttattttcgctattag |
3924139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 14202125 - 14202065
Alignment:
| Q |
10 |
atatgaaagatgcaggtgggtgaattctaattttcttcctaaatatgacataatggtattt |
70 |
Q |
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| T |
14202125 |
atatcaaagatgctagtggttgaattctaaatttcttcctaaatatgacatcatggtattt |
14202065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 7421304 - 7421245
Alignment:
| Q |
19 |
atgcaggtgggtgaattctaattttcttcctaaatatgacataatggtatttggatggtt |
78 |
Q |
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| T |
7421304 |
atgctggtggttgaattctaattttcttccaaaatatcacatcatggtatttgggtggtt |
7421245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 13574018 - 13573961
Alignment:
| Q |
15 |
aaagatgcaggtgggtgaattctaattttcttcctaaatatgacataatggtatttgg |
72 |
Q |
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| T |
13574018 |
aaagatgctggtggttgaattctaattttcttccttaatataatatcatgctatttgg |
13573961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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