View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4103_high_5 (Length: 298)

Name: NF4103_high_5
Description: NF4103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4103_high_5
NF4103_high_5
[»] chr4 (2 HSPs)
chr4 (125-298)||(38186819-38186992)
chr4 (4-40)||(38186697-38186733)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 125 - 298
Target Start/End: Original strand, 38186819 - 38186992
Alignment:
Q  125 cttaccatcgagggtaaaatgtttggtgaaaggggtacgggggagaaggaaaattttgcatagagaaataatccaaaggaaaatgaaagaagcgattatg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38186819 cttaccatcgagggtaaaatgtttggtgaaaggggtacgggggagaaggaaaattttgcatagagaaataatccaaaggaaaatgaaagaagcgattatg 38186918  T
Q  225 agaatcaaggccatgaaggttgaaattcaaacaccaattcaatgattagggctcaaaatgaattgtttttattc 298  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  38186919 agaatcaaggccatgaaggttgaaattgaaacaccaattcaatgattagtgctcaaaatgaattgtttttattc 38186992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 38186697 - 38186733
Alignment:
Q  4 tcagggtgagcaataaccagcaagacatttctcttcc 40  Q
    |||||||||||||||||||||||||||||||||||||    
T  38186697 tcagggtgagcaataaccagcaagacatttctcttcc 38186733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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