View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4103_low_1 (Length: 739)
Name: NF4103_low_1
Description: NF4103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4103_low_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 11 - 724
Target Start/End: Complemental strand, 6184799 - 6184079
Alignment:
| Q |
11 |
caaaggtaaatgacacattgatttttaatacatttgttctatgtcaagtgtttaatgagtttaatgcaaggaaattggagaaaaagaatgtctttgaagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6184799 |
caaaggtaaatgacacattgatttttaatacatttgttctatgtcaagtgtttaatgagtttaatgcaaggaaattggagaaaaagaatgtctttgaagg |
6184700 |
T |
|
| Q |
111 |
aatattcaagagcaagttgtttttgggaattattggtgtgacattggtgcttcaagttgtgatggttgagtttttgaagaagtttgctggtacagaaagg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6184699 |
aatattcaagagcaagttgtttttgggaattattggtgtgacattggtgcttcaagttgtgatggttgagtttttgaagaagtttgctggtacagaaagg |
6184600 |
T |
|
| Q |
211 |
ttgaattggagagaatggattatttgtattggttttggtgctgtttcttggccaattggttttcttgtgaagttgatacctgtttcagataaaccacttc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6184599 |
ttgaattggagagaatggattatttgtattggttttggtgctgtttcttggccaattggttttcttgtgaagttgatacctgtttcagataaaccacttc |
6184500 |
T |
|
| Q |
311 |
ttgattttttgcttatgaagaagacttagaatagattatgaagaataagccataatgattgtttagagatg----atctaggaaagaaaatgtgggttgt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
6184499 |
ttgattttttgcttatgaagaagacttagaatagattatgaagaataagccataatgattgtttagagatgctacatctaggaaagaaaatgtgggttgt |
6184400 |
T |
|
| Q |
407 |
tatgtaaatgtaggaacattctatttgtattgtaca-nnnnnnnnaatcacatttattacatgatacacattctttaatatttaacaaaacttattttga |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6184399 |
tatgtaaatgtaggaacattctatttgtattgtacatttttttttaatcacatttattacatgatacacattctttaatatttaacaaaacttattttga |
6184300 |
T |
|
| Q |
506 |
tttaagatataattatttatgactatttgaatgtatttgagtac--nnnnnnnncaaaatattataaaattattctatgcaacatccaacnnnnnnnctt |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
6184299 |
tttaagatataattatttatgactatttgaatgtatttgagtacttttttttttcaaaatattataaaattattctatgcaacatccaattttttttctt |
6184200 |
T |
|
| Q |
604 |
acagaaattgttgcctatttcattcgaacacttttcatcatcaagctgctttctagctnnnnnnntaaaactataatcttttgggaaacagtagtagcaa |
703 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
6184199 |
acagaaattgttgcctatttcattcgaacacttttcatcatcaagctgctttctagctaaaaacataaaactataattttttgggaaacagtagtagcaa |
6184100 |
T |
|
| Q |
704 |
tgcaatttcttggtgcttagt |
724 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
6184099 |
tgcaatttcttggtgcttagt |
6184079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 4235673 - 4235365
Alignment:
| Q |
13 |
aaggtaaatgacacattgatttttaatacatttgttctatgtcaagtgtttaatgagtttaatgcaaggaaattggagaaaaagaatgtctttgaaggaa |
112 |
Q |
| |
|
||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | |
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|
| T |
4235673 |
aaggtaaatgacacattaatattcaatacatttgttctttgtcaagtgtttaatgagtttaatgcaaggaaattggagaagaagaatgtgtttgaaggga |
4235574 |
T |
|
| Q |
113 |
tattcaagagcaagttgtttttgggaattattggtgtgacattggtgcttcaagttgtgatggttgagtttttgaagaagtttgctggtacagaaaggtt |
212 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| || ||||| |
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|
| T |
4235573 |
tatttaagagcaagttgtttttgggaattgttggtgtgacattggtgcttcaagttgtgatggttgagtttttgaaaaagtttgctaatactgagaggtt |
4235474 |
T |
|
| Q |
213 |
gaattggagagaatggattatttgtattggttttggtgctgtttcttggccaattggttttcttgtgaagttgatacctgtttcagataaaccacttctt |
312 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| ||| | |||||||| ||||| || ||||| ||||| | ||| |
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|
| T |
4235473 |
gaattggagagagtggattgtttgtattggttttgctgctgtttcttggccaattggatttgtggtgaagtttataccagtctcagacaaacctttactt |
4235374 |
T |
|
| Q |
313 |
gattttttg |
321 |
Q |
| |
|
||||||||| |
|
|
| T |
4235373 |
gattttttg |
4235365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 30441633 - 30441730
Alignment:
| Q |
12 |
aaaggtaaatgacacattgatttttaatacatttgttctatgtcaagtgtttaatgagtttaatgcaaggaaattggagaaaaagaatgtctttgaag |
109 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| |
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|
| T |
30441633 |
aaaggtaaatgacacattgatatttaatacatttgttctatgtcaagtgtttaatgagtttaatgcaaggaaattggagaacaaaaatgtgtttgaag |
30441730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 29475823 - 29475961
Alignment:
| Q |
11 |
caaaggtaaatgacacattgatttt--taatacatttgttctatgtcaagtgtttaatgagtttaatgcaaggaaattggagaaaaagaatgtctttgaa |
108 |
Q |
| |
|
||||||||||||||| |||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
29475823 |
caaaggtaaatgacatattgatattcttaatacatttgctctatgtcaagtgtttaatgagtttaatgcaaggaaattggagaaaaagaatgtttttgaa |
29475922 |
T |
|
| Q |
109 |
ggaatattcaagagcaagttgtttttgggaattattggt |
147 |
Q |
| |
|
|| |||| || ||||||||||||| ||||| ||||||| |
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|
| T |
29475923 |
gggatatgtaaaagcaagttgttttagggaaatattggt |
29475961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 19592698 - 19592636
Alignment:
| Q |
12 |
aaaggtaaatgacacattgatttttaatacatttgttctatgtcaagtgtttaatgagtttaa |
74 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19592698 |
aaaggtaaacgacacattgatatttaatacatttgttctatgtcaagtgtttaatgagtttaa |
19592636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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