View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4103_low_5 (Length: 341)

Name: NF4103_low_5
Description: NF4103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4103_low_5
NF4103_low_5
[»] chr3 (1 HSPs)
chr3 (29-323)||(46896507-46896801)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 29 - 323
Target Start/End: Original strand, 46896507 - 46896801
Alignment:
Q  29 cacatagcaatatgtgaaatctgtatacatgatgaatgcaaatgaagtttgtgaagggtaaaaagtgaaaactatagaactcgctaggtttcccgcagag 128  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46896507 cacatagcaatatgtgaaatctgtatacatgatgaatgcaaatcaagtttgtgaagggtaaaaagtgaaaactatagaactcgctaggtttcccgcagag 46896606  T
Q  129 ggctgaacctcaaaacaaagcaagatagtttcactgttactgcatggtaagttcgttaacaattccggcacataaagcagagggtttccatcagagtctg 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46896607 ggctgaacctcaaaacaaagcaagatagtttcactgttactgcatggtaagttcgttaacaattccggcacataaagcagagggtttccatcagagtctg 46896706  T
Q  229 atccatctcgaaaagcggttcaatttttctatgagagaattgtaagatattttaggctgtagttgcggcacacaaaggataatagactgcattga 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46896707 atccatctcgaaaagcggttcaatttttctatgagagaattgtaagatattttaggctgtagttgcggcacacaaaggataatagactgcattga 46896801  T

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