View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4103_low_8 (Length: 229)
Name: NF4103_low_8
Description: NF4103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4103_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 26586528 - 26586331
Alignment:
| Q |
18 |
cttttcatatcacaaaatgatgagcatctgcacaggctgaaggcttctgaaatcatcacctcctcctcatcaataagctggaacctcaaggatttccata |
117 |
Q |
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| T |
26586528 |
cttttcatatcacaaaatgatgagcatctgcacagactgaaggcttctgaaatcatcacctcctcctcatcaataagctggaacctcaatgatttccata |
26586429 |
T |
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| Q |
118 |
aatacactgataagattcttcagttgcaagctataaaacactccttggcacacaaatcttgcaaaacatgtgtgaatgaattactaatagggtctctg |
215 |
Q |
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| T |
26586428 |
aatacactgataagattcttcagttgcaagctataaaacactccttggcacacaaatcttgcaaaacatgtgtgaatgaattactaatagggtctctg |
26586331 |
T |
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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 48213731 - 48213801
Alignment:
| Q |
121 |
acactgataagattcttcagttgcaagctataaaacactccttggcacacaaatcttgcaaaacatgtgtg |
191 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||| |||||| ||||||| ||||||||||||||| |
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| T |
48213731 |
acactgataagattcttcagttgcaaactatacaacactcgttggcatacaaatcctgcaaaacatgtgtg |
48213801 |
T |
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