View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4104_low_2 (Length: 531)
Name: NF4104_low_2
Description: NF4104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4104_low_2 |
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| [»] scaffold0693 (1 HSPs) |
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Alignment Details
Target: scaffold0693 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: scaffold0693
Description:
Target: scaffold0693; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 518
Target Start/End: Complemental strand, 6158 - 5649
Alignment:
| Q |
18 |
acaaagagaggtattcattgttctttaatatgtcctaggtgcaattcaaaagcgaaaaatgtagatcatgttattttgaaggatttagatcatgttt--a |
115 |
Q |
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| T |
6158 |
acaaagagaggtattcattgttctttaatatgtcctaggtgcaattcaaaagcgaaaaatgtagatcatgttattttgaaggatttagatcatgttttta |
6059 |
T |
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| Q |
116 |
caagctcctttcccagatattgagat-----cgttgttctttaatatgtacta---ttannnnnnnnaagg--agacattatctcgactattatttatag |
205 |
Q |
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| T |
6058 |
caagctcctttcccagatattgagatatattcgttgttctttaatatgtacttatttttttttttttaaggttagacattatctcgactattatttatag |
5959 |
T |
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| Q |
206 |
catacggtgggctaaaaatcaaaattgttttgagtggaagcaaatatctatcaagagatccatgactaaggtgatgagctatctgagtagtagctatcca |
305 |
Q |
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| T |
5958 |
catacggtgggctaaaaatcaaaattgttttgagtggaagcaaatatctatcaagagatccatgatgaaggtgatgagctatctgagtag---ctatcca |
5862 |
T |
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| Q |
306 |
gagatgcagcaaaagcccaatcacctccttcattgtcttctacttcgacacctgatcgctgtaatttggttttgatggttgcctcctcccaatgacaata |
405 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5861 |
gagatgcagcaaaagcccaatcgcctccttcattgtcttctacttcgacacctgatcgctgtaatttggttttgatggttgcctcctcccaatgacaata |
5762 |
T |
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| Q |
406 |
caagataactgttgatgccgcaattcctcccatgatcagggtttacgattgcgtcattagagactcaaaaggatgcttcactgatgcttagttctcacaa |
505 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5761 |
caagataactgttgatgccgcaattcctctcatgatcagggtctacgattgcgtcattagagactcaaaaggatgcttcactgatgcttagttctgacaa |
5662 |
T |
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| Q |
506 |
cttcctctcatct |
518 |
Q |
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||||||||||||| |
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| T |
5661 |
cttcctctcatct |
5649 |
T |
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