View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4104_low_3 (Length: 530)

Name: NF4104_low_3
Description: NF4104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4104_low_3
NF4104_low_3
[»] chr1 (20 HSPs)
chr1 (301-530)||(33150582-33150811)
chr1 (236-529)||(5808284-5808571)
chr1 (303-515)||(13868154-13868366)
chr1 (288-465)||(52028258-52028435)
chr1 (303-530)||(45795020-45795247)
chr1 (291-530)||(26510681-26510917)
chr1 (155-220)||(5808230-5808295)
chr1 (155-217)||(26510974-26511036)
chr1 (155-220)||(34352493-34352558)
chr1 (296-408)||(5287581-5287693)
chr1 (155-220)||(33150463-33150528)
chr1 (155-220)||(45794900-45794965)
chr1 (297-530)||(1248910-1249142)
chr1 (155-220)||(13868421-13868486)
chr1 (321-530)||(49458337-49458546)
chr1 (236-280)||(34352547-34352592)
chr1 (155-220)||(52028153-52028218)
chr1 (325-404)||(3545551-3545630)
chr1 (302-383)||(48380421-48380502)
chr1 (155-191)||(41614707-41614743)
[»] chr2 (18 HSPs)
chr2 (288-530)||(11195925-11196167)
chr2 (288-530)||(32623934-32624175)
chr2 (309-529)||(144349-144569)
chr2 (291-515)||(7300255-7300478)
chr2 (292-386)||(6822992-6823086)
chr2 (155-220)||(11195820-11195885)
chr2 (325-494)||(17689609-17689778)
chr2 (155-220)||(32623829-32623894)
chr2 (155-220)||(144630-144694)
chr2 (412-493)||(11579901-11579982)
chr2 (155-202)||(18739760-18739807)
chr2 (309-510)||(18634560-18634761)
chr2 (294-357)||(45126374-45126437)
chr2 (293-343)||(31265804-31265854)
chr2 (291-383)||(9005414-9005506)
chr2 (427-491)||(40110063-40110127)
chr2 (414-493)||(12562722-12562801)
chr2 (155-213)||(18634433-18634491)
[»] chr8 (15 HSPs)
chr8 (1-220)||(9510109-9510329)
chr8 (236-529)||(9510318-9510611)
chr8 (236-530)||(6244671-6244965)
chr8 (268-530)||(25900590-25900850)
chr8 (155-216)||(6244617-6244678)
chr8 (300-494)||(6985098-6985292)
chr8 (291-383)||(15438746-15438838)
chr8 (291-383)||(15530050-15530142)
chr8 (155-217)||(25900493-25900555)
chr8 (447-519)||(26658707-26658779)
chr8 (309-396)||(9492274-9492360)
chr8 (418-491)||(25192793-25192866)
chr8 (412-493)||(42579806-42579887)
chr8 (155-191)||(1636519-1636555)
chr8 (462-530)||(3938963-3939031)
[»] chr4 (21 HSPs)
chr4 (236-530)||(20543608-20543901)
chr4 (236-530)||(27299688-27299981)
chr4 (236-530)||(43517054-43517347)
chr4 (155-220)||(20543554-20543619)
chr4 (295-493)||(19119658-19119856)
chr4 (155-220)||(43517336-43517401)
chr4 (296-408)||(52814069-52814181)
chr4 (155-218)||(27299634-27299697)
chr4 (292-361)||(48029228-48029297)
chr4 (296-407)||(41879487-41879598)
chr4 (291-407)||(32348755-32348871)
chr4 (295-343)||(34104919-34104967)
chr4 (296-360)||(53569591-53569655)
chr4 (288-383)||(8081660-8081755)
chr4 (309-396)||(42272534-42272621)
chr4 (292-374)||(55261568-55261650)
chr4 (293-357)||(9690001-9690065)
chr4 (296-396)||(40483745-40483845)
chr4 (294-389)||(56337963-56338058)
chr4 (292-361)||(52619557-52619626)
chr4 (293-357)||(18443416-18443480)
[»] chr5 (22 HSPs)
chr5 (309-530)||(5099961-5100182)
chr5 (309-530)||(21368242-21368461)
chr5 (295-530)||(979411-979646)
chr5 (291-506)||(379490-379705)
chr5 (412-503)||(34369607-34369698)
chr5 (292-358)||(18718444-18718510)
chr5 (325-494)||(475824-475993)
chr5 (155-220)||(35100975-35101040)
chr5 (155-220)||(979694-979759)
chr5 (155-220)||(21368522-21368586)
chr5 (292-383)||(14055110-14055201)
chr5 (155-217)||(5100246-5100307)
chr5 (292-383)||(24177191-24177282)
chr5 (155-217)||(18718568-18718630)
chr5 (296-377)||(374768-374849)
chr5 (291-404)||(5909513-5909626)
chr5 (418-491)||(17431216-17431289)
chr5 (291-351)||(22179482-22179542)
chr5 (292-383)||(13735359-13735450)
chr5 (291-382)||(27679669-27679760)
chr5 (295-335)||(17431093-17431133)
chr5 (288-336)||(35101080-35101128)
[»] chr3 (19 HSPs)
chr3 (303-530)||(40514030-40514257)
chr3 (268-530)||(34828974-34829235)
chr3 (303-515)||(20857545-20857757)
chr3 (427-515)||(20857941-20858029)
chr3 (291-494)||(35216261-35216464)
chr3 (292-386)||(46249325-46249419)
chr3 (292-383)||(14306850-14306941)
chr3 (155-220)||(40514312-40514377)
chr3 (296-407)||(7935524-7935635)
chr3 (296-407)||(13700573-13700684)
chr3 (292-357)||(4963942-4964007)
chr3 (328-494)||(11237420-11237586)
chr3 (300-494)||(31921710-31921904)
chr3 (155-217)||(34828877-34828939)
chr3 (451-500)||(46249211-46249260)
chr3 (418-491)||(53941023-53941096)
chr3 (454-530)||(14307012-14307088)
chr3 (155-220)||(20857428-20857490)
chr3 (296-400)||(34294232-34294336)
[»] chr7 (19 HSPs)
chr7 (309-530)||(26855308-26855529)
chr7 (311-530)||(35213230-35213449)
chr7 (295-491)||(38488841-38489037)
chr7 (296-386)||(27724572-27724662)
chr7 (309-374)||(4106880-4106945)
chr7 (155-220)||(35213102-35213167)
chr7 (309-359)||(36031676-36031726)
chr7 (155-220)||(26855183-26855247)
chr7 (155-218)||(4107009-4107072)
chr7 (158-220)||(36031554-36031615)
chr7 (291-374)||(30802254-30802337)
chr7 (292-503)||(34103057-34103268)
chr7 (293-396)||(44846235-44846338)
chr7 (451-509)||(27724449-27724507)
chr7 (295-353)||(33822023-33822081)
chr7 (295-357)||(39474518-39474580)
chr7 (282-347)||(2686350-2686415)
chr7 (451-500)||(28327093-28327142)
chr7 (155-220)||(38489084-38489149)
[»] chr6 (11 HSPs)
chr6 (309-530)||(14687332-14687552)
chr6 (303-463)||(14320512-14320672)
chr6 (427-503)||(2710065-2710141)
chr6 (155-220)||(14320727-14320792)
chr6 (295-362)||(33095552-33095619)
chr6 (155-217)||(14687616-14687677)
chr6 (325-494)||(2364716-2364885)
chr6 (329-494)||(22532132-22532297)
chr6 (291-407)||(31706348-31706464)
chr6 (291-372)||(6936969-6937050)
chr6 (418-491)||(25349927-25350000)
[»] scaffold0246 (1 HSPs)
scaffold0246 (296-396)||(21684-21784)
[»] scaffold0321 (1 HSPs)
scaffold0321 (291-386)||(17642-17737)
[»] scaffold0057 (1 HSPs)
scaffold0057 (291-393)||(3394-3496)
[»] scaffold0048 (1 HSPs)
scaffold0048 (318-396)||(50912-50990)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-107; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 301 - 530
Target Start/End: Original strand, 33150582 - 33150811
Alignment:
Q  301 tcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatctta 400  Q
    ||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  33150582 tcgatacccagacataataaaggttccgaccaccatctttgagtaccgtacataaaattgactttgttagctttaagccaccataaagagtgaaatctta 33150681  T
Q  401 ctttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttg 500  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33150682 ctttatctgctagttgttcaacggtggtttggatgttattatagagtctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttg 33150781  T
Q  501 gagaaatgattgacgagcctttgagtgacc 530  Q
    |||||||||||||||||| |||||||||||    
T  33150782 gagaaatgattgacgagcttttgagtgacc 33150811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 236 - 529
Target Start/End: Original strand, 5808284 - 5808571
Alignment:
Q  236 tgtactaaaagtgtcacccctaaaacagtcagtcatacaatgaaggaaacagaagcaaaggtcagtcgatacacaaacataataaagggtccgaccacca 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| ||||         
T  5808284 tgtactaaaagtgtcacccctaaaacagtcagtcatacaatgaaggaaacagaagcaaaggacaatcgatacccaaacataataaagggttcgac----- 5808378  T
Q  336 tctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttactttatcggctagttgttcaacggtggtttggatg 435  Q
     || || ||||||| || |||| || | || |||||||||| |||| | |||||||||||  ||||||| || ||||| ||||| | ||||||||||||     
T  5808379 -ctctgtgtaccgtgcacaaaagtgaccttattagctttaagccactaaaaagagtgaaactttactttttctgctagctgttcgatggtggtttggata 5808477  T
Q  436 ttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatgattgacgagcctttgagtgac 529  Q
    || ||||  ||| | || |||||||| |||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||    
T  5808478 ttgttatgaaatttgttgttacgttcgttccaaaccaaccagacacaaagtaaccaaataagttgaaggaaggattgacgagcctttgagtgac 5808571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 303 - 515
Target Start/End: Complemental strand, 13868366 - 13868154
Alignment:
Q  303 gatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttact 402  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| | |||||| ||||||||| || | |||    
T  13868366 gatacccaaacataataaagggtccgaccaccatctttgtgtaccgtacataaaattggccttattagcttttagccaccacaaagagtgatatttaact 13868267  T
Q  403 ttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttgga 502  Q
    || |   |||||||||| | ||| |||||||| |||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  13868266 ttttttactagttgttccatggttgtttggatattattataaagtctattattacgttcattccaaaccaaccaaacacatagtaaccaaataagttgta 13868167  T
Q  503 gaaatgattgacg 515  Q
    | || ||||||||    
T  13868166 ggaaggattgacg 13868154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 288 - 465
Target Start/End: Original strand, 52028258 - 52028435
Alignment:
Q  288 aagcaaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaa 387  Q
    |||||||||||  || | || |||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| || ||||||||||    
T  52028258 aagcaaaggtcgatctaaacccaaacaaaataaagggtccgaccaccatctttgagtaccatacatgaaatttgctttgttagcttgaagccaccataaa 52028357  T
Q  388 gagtgaaatcttactttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattc 465  Q
    || |||||||  |||||||| |||||| ||||||| ||||||||||| |||||| | | |||||||||||||||||||    
T  52028358 gaatgaaatcgaactttatctgctagtagttcaactgtggtttggatattattaaaaagtctattattacgttcattc 52028435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 303 - 530
Target Start/End: Original strand, 45795020 - 45795247
Alignment:
Q  303 gatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttact 402  Q
    ||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| || ||| | || | |||||| ||||||||| || | |||    
T  45795020 gatacccaaacataataaagggtccgaccaccatttttgtgtaccgtacataaaattggccttattaacctttagccaccacaaagagtgatatttaact 45795119  T
Q  403 ttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttgga 502  Q
    || ||  |||| | ||| | ||| |||| ||| |||||||| | ||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |    
T  45795120 ttttctactagctcttccatggttgttttgatattattataaagtctattattacgtacattccaaaccaaccaaacacatagtaaccaaataagttgta 45795219  T
Q  503 gaaatgattgacgagcctttgagtgacc 530  Q
      || |||||||| |||  |||||||||    
T  45795220 cgaaggattgacgggcccgtgagtgacc 45795247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 291 - 530
Target Start/End: Complemental strand, 26510917 - 26510681
Alignment:
Q  291 caaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagag 390  Q
    ||||||| | ||||||| ||||||||||||| ||||||||||  ||||||||| ||||||||||||| |||| || |||||||||| | |||| || |||    
T  26510917 caaaggtgaatcgatacccaaacataataaatggtccgacca--atctttgagaaccgtacataaaagtggccttattagctttaagctaccaaaaggag 26510820  T
Q  391 tgaaatcttactttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaacc 490  Q
    |||||| ||||||| ||  |||||||||||| | |||||||||| |||||||  | ||| || |||||||||||||| || |||||  ||||||||||||    
T  26510819 tgaaattttactttttctactagttgttcaatgttggtttggatattattatgaagtctgttgttacgttcattccacacaaaccaggcacaaagtaacc 26510720  T
Q  491 aaataagttggagaaatgattgacgagcctttgagtgacc 530  Q
    | |||||||| || ||  ||||||||||||| ||||||||    
T  26510719 atataagttgaag-aagaattgacgagccttcgagtgacc 26510681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 5808230 - 5808295
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5808230 aagacataaaaatggaatatattaacaacggcagtgagtcacctaagtacaagatgtactaaaagt 5808295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 26511036 - 26510974
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaa 217  Q
    ||||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  26511036 aagacataaaaatggaatatattaataacggtagtgaaccacctaagtacaagatgtactaaa 26510974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 34352493 - 34352558
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    ||||||||||||| |||||||| |||||||| |||||  |||||||||||||||||||||||||||    
T  34352493 aagacataaaaatggaatatatcaacaacggcagtgaaacacctaagtacaagatgtactaaaagt 34352558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 408
Target Start/End: Original strand, 5287581 - 5287693
Alignment:
Q  296 gtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaa 395  Q
    ||||||| |||| ||||||  ||||||||| ||||||||| ||||||| |||||||| |||| ||  |||||| ||||||| |||||| || || |||||    
T  5287581 gtcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgattttgttggctttaagccaccacaacgaatgaaa 5287680  T
Q  396 tcttactttatcg 408  Q
    | |||||||||||    
T  5287681 ttttactttatcg 5287693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 33150463 - 33150528
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    ||||||||||||| ||||||||||||||||| |||||  ||||||||||||| ||||| |||||||    
T  33150463 aagacataaaaatggaatatattaacaacggcagtgaaacacctaagtacaaaatgtagtaaaagt 33150528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 45794900 - 45794965
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    |||| |||||||| | ||||||||||||||| |||||  |||||||||||||||||||||||||||    
T  45794900 aagatataaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtactaaaagt 45794965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 530
Target Start/End: Complemental strand, 1249142 - 1248910
Alignment:
Q  297 tcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaat 396  Q
    ||||||||||| ||||||||| | |||||||| |||||| |||||||  ||||||| |||  || | ||  ||||||| | |||||||||||| || |||    
T  1249142 tcagtcgatacccaaacataacagagggtccggccaccacctttgagagccgtacacaaatgtgccattactagcttttagccaccataaagaatgtaat 1249043  T
Q  397 cttactttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataa 496  Q
     ||| ||| |    ||  | ||| | || |||||||||||||||| |   | | || || ||||||||||||| || ||| |||||||||||||||||||    
T  1249042 -ttaatttttgtaataaatcttcgatggaggtttggatgttattaaaatgtttgttgttgcgttcattccaaatcatccacacacaaagtaaccaaataa 1248944  T
Q  497 gttggagaaatgattgacgagcctttgagtgacc 530  Q
    |||| ||||| ||| |||  ||||| ||||||||    
T  1248943 gttgaagaaaggatcgacacgccttcgagtgacc 1248910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 13868486 - 13868421
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    |||||||||||||   ||||||||||||||| |||||  ||||||||||||||||||| |||||||    
T  13868486 aagacataaaaatgagatatattaacaacggcagtgaaacacctaagtacaagatgtattaaaagt 13868421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 530
Target Start/End: Original strand, 49458337 - 49458546
Alignment:
Q  321 agggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttactttatcggctagttgttca 420  Q
    ||||||||||||||| ||||||  |||||||| |||  |||||||  ||||||| | |||||||||||| |  ||| ||||||| || | ||    ||||    
T  49458337 agggtccgaccaccacctttgataaccgtacacaaatgtggctttactagcttttagccaccataaagaatataattttactttttctgataaaccttca 49458436  T
Q  421 acggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatgattgacgagcct 520  Q
    | |   |||||||| |||||| | | ||  || || |||||||| ||||||| ||| |||||||| |||||||||||||| ||||| |||  ||| ||||    
T  49458437 atgaatgtttggatattattaaaaagtcatttgttgcgttcatttcaaaccatccacacacaaagcaaccaaataagttgaagaaaggatctacgtgcct 49458536  T
Q  521 ttgagtgacc 530  Q
    | ||||||||    
T  49458537 tcgagtgacc 49458546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 34352547 - 34352592
Alignment:
Q  236 tgtactaaaagtgtcacccct-aaaacagtcagtcatacaatgaag 280  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||    
T  34352547 tgtactaaaagtgtcacccctaaaaacagtcagacatacaatgaag 34352592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 52028153 - 52028218
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    ||||||||||||| |||||||||||| || | |||||  |||||||||| |||||||| |||||||    
T  52028153 aagacataaaaatggaatatattaacgacagcagtgaaacacctaagtataagatgtattaaaagt 52028218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 404
Target Start/End: Complemental strand, 3545630 - 3545551
Alignment:
Q  325 tccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttacttt 404  Q
    ||||||||||| ||||||| ||| || |||||  |||||||  ||||||| | ||||||||||||||| ||| |||||||    
T  3545630 tccgaccaccacctttgagaaccttatataaatgtggctttactagcttttagccaccataaagagtgtaattttacttt 3545551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 383
Target Start/End: Original strand, 48380421 - 48380502
Alignment:
Q  302 cgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccacca 383  Q
    |||||| ||||||||| |||| ||||||||||||||| | || ||| |||| || | |||| ||||||||||| | ||||||    
T  48380421 cgatacccaaacataacaaagagtccgaccaccatctctaagaaccatacacaagagtggcgttgttagcttttagccacca 48380502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 41614743 - 41614707
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtga 191  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  41614743 aagacataaaaatagaatatattaacatcggtggtga 41614707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 183; Significance: 9e-99; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 288 - 530
Target Start/End: Original strand, 11195925 - 11196167
Alignment:
Q  288 aagcaaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaa 387  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  11195925 aagcaaaggtcaatcgatactcagacataataaagggtccgaccaccatctttgagtaccgaacataaaattgactttgttagctttaagccaccataaa 11196024  T
Q  388 gagtgaaatcttactttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagta 487  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||| | ||||||    
T  11196025 gagtgaaattttactttatctgctagttgttcaacggtggtttggatgttattataaagcatattattacgttcattccaaaccaaccaaataaaaagta 11196124  T
Q  488 accaaataagttggagaaatgattgacgagcctttgagtgacc 530  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  11196125 accaaataagttggagaaattattgacgagcctttgagtgacc 11196167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 288 - 530
Target Start/End: Original strand, 32623934 - 32624175
Alignment:
Q  288 aagcaaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaa 387  Q
    |||||||||||  || | || |||||| ||||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||| || |||| |||||    
T  32623934 aagcaaaggtcgatctaaacccaaacaaaataaagggtccgaccaccat-tttgggtaccatacataaaatttgctttgttagcttgaagccactataaa 32624032  T
Q  388 gagtgaaatcttactttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagta 487  Q
    || ||||||   |||||||| |||||||||||||| ||||||||||| |||||| | | ||||||||||||||| |||||||||| ||||||||||||||    
T  32624033 gaatgaaattgaactttatctgctagttgttcaaccgtggtttggatattattaaaaagtctattattacgttcgttccaaaccacccaaacacaaagta 32624132  T
Q  488 accaaataagttggagaaatgattgacgagcctttgagtgacc 530  Q
    ||||||||||||| |||||||| ||||||||||||||||||||    
T  32624133 accaaataagttgaagaaatgactgacgagcctttgagtgacc 32624175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 309 - 529
Target Start/End: Complemental strand, 144569 - 144349
Alignment:
Q  309 caaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttactttatcg 408  Q
    |||||| |||||||||||||||||||||| ||| ||||| ||||| ||||| || |||||||||| || |||||||||||| || ||||  ||||||||     
T  144569 caaacaaaataaagggtccgaccaccatcgttgggtaccatacatgaaatttgcgttgttagcttgaagccaccataaagaatggaatcgaactttatct 144470  T
Q  409 gctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatg 508  Q
    ||||| |  ||||| ||||||||||| |||||| | |  |||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||    
T  144469 gctagattgtcaactgtggtttggatattattaaaaagcctattattacgttcgttccaaaccacccaaacacaaagtaaccaaataagttgaagaaatg 144370  T
Q  509 attgacgagcctttgagtgac 529  Q
    | |||||||||||||||||||    
T  144369 actgacgagcctttgagtgac 144349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 291 - 515
Target Start/End: Original strand, 7300255 - 7300478
Alignment:
Q  291 caaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagag 390  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||  |||| ||| |||  ||||  | || ||||||| |||| | || |||    
T  7300255 caaaggtcagtcgatacccaaacataacaaagggtccgaccaccatctttgacaaccgcacacaaacgtggc-atattggctttaagccactaaaacgag 7300353  T
Q  391 tgaaatcttactttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaacc 490  Q
    |||||| | || || ||    |||||||||| || |||||||||||||||| | | ||  || || | |||||||||||||| ||| |||||||||| ||    
T  7300354 tgaaatttaaccttttctatgagttgttcaatgggggtttggatgttattaaatagtccgttgttgcattcattccaaaccatccagacacaaagtagcc 7300453  T
Q  491 aaataagttggagaaatgattgacg 515  Q
    ||||||| || ||||| ||| ||||    
T  7300454 aaataagctgaagaaaagatcgacg 7300478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 292 - 386
Target Start/End: Original strand, 6822992 - 6823086
Alignment:
Q  292 aaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataa 386  Q
    |||||||| ||||||| |||||| | |||||||| ||||||||||||||||| |||||||| ||||||||  || |||||||| |||||||||||    
T  6822992 aaaggtcaatcgatacccaaacaaagtaaagggttcgaccaccatctttgagaaccgtacacaaaattggtgttattagcttttaaccaccataa 6823086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 11195820 - 11195885
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    ||||||||||||| |||||||||||||||||||| ||  |||||||||| ||||||||||||||||    
T  11195820 aagacataaaaatggaatatattaacaacggtagggaaacacctaagtataagatgtactaaaagt 11195885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 325 - 494
Target Start/End: Original strand, 17689609 - 17689778
Alignment:
Q  325 tccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttactttatcggctagttgttcaacgg 424  Q
    ||||||||||| ||||||| |||||||| |||  |||||||  ||||||| | ||||||||||||||| ||| ||||||| || | ||    ||||| ||    
T  17689609 tccgaccaccacctttgagaaccgtacacaaatgtggctttactagcttttagccaccataaagagtgtaattttactttttctgataagccttcaatgg 17689708  T
Q  425 tggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaat 494  Q
      |||||| | |||||| | | ||| || || |||||||||||||||| ||| |||||||||||||||||    
T  17689709 atgtttgggtattattaaaaagtctgttgttgcgttcattccaaaccatccacacacaaagtaaccaaat 17689778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 32623829 - 32623894
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    ||||||||||||| ||||||||||||||||| ||| |  |||||||||||||||||||||||||||    
T  32623829 aagacataaaaatggaatatattaacaacggcagtaaaacacctaagtacaagatgtactaaaagt 32623894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 144694 - 144630
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    ||||||||||||| ||||||||||||||||| |||||  || ||||||||||||||||||||||||    
T  144694 aagacataaaaatggaatatattaacaacggcagtga-acatctaagtacaagatgtactaaaagt 144630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 412 - 493
Target Start/End: Complemental strand, 11579982 - 11579901
Alignment:
Q  412 agttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaa 493  Q
    |||||||| | ||||||||||||||||||| | | ||||| ||||||||||||| |||||| ||| ||||||||||| ||||    
T  11579982 agttgttctatggtggtttggatgttattaaatattctatcattacgttcattctaaaccacccagacacaaagtaaacaaa 11579901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 18739760 - 18739807
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagt 202  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||    
T  18739760 aagacataaaaatagaatatattaacaacggtagtgaaccacctaagt 18739807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 510
Target Start/End: Original strand, 18634560 - 18634761
Alignment:
Q  309 caaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttactttatcg 408  Q
    ||||||||| |||||||||||||||||||| ||||  || |||| |||  |||  || ||||||||||  ||||| ||  | |||||| | ||||| ||     
T  18634560 caaacataacaaagggtccgaccaccatctctgagagccatacacaaacgtggtattattagctttaagtcaccaaaacaaatgaaatttaactttttct 18634659  T
Q  409 gctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatg 508  Q
       ||||| ||   ||||||||||||||||||| | | | | ||||||||||||||||||||||  || | |||||||||| |||| || || |||||||    
T  18634660 aagagttgatctgtggtggtttggatgttattaaatattttgttattacgttcattccaaaccatacagaaacaaagtaacgaaatgagctgaagaaatg 18634759  T
Q  509 at 510  Q
    ||    
T  18634760 at 18634761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 45126374 - 45126437
Alignment:
Q  294 aggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaa 357  Q
    |||||||||||||| |||| | | ||||||||| ||||||||||| |||| |||||||||||||    
T  45126374 aggtcagtcgatacccaaataaagtaaagggtctgaccaccatctctgagaaccgtacataaaa 45126437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 343
Target Start/End: Original strand, 31265804 - 31265854
Alignment:
Q  293 aaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgag 343  Q
    ||||||||| ||||| |||||| | ||||||||||||||||||||||||||    
T  31265804 aaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgag 31265854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 383
Target Start/End: Original strand, 9005414 - 9005506
Alignment:
Q  291 caaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccacca 383  Q
    |||||| ||||||||||  |||||||  | ||||||||||||||| || ||||  ||||||||||||||||| || | ||| |||| ||||||    
T  9005414 caaaggccagtcgatacctaaacatagcatagggtccgaccaccaactctgagatccgtacataaaattggcattataagccttaagccacca 9005506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 491
Target Start/End: Original strand, 40110063 - 40110127
Alignment:
Q  427 gtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaacca 491  Q
    |||||||| |||||| | | |||||| ||||||||||||||||| | ||| ||||||||||||||    
T  40110063 gtttggatattattaaatattctattgttacgttcattccaaactacccagacacaaagtaacca 40110127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 493
Target Start/End: Original strand, 12562722 - 12562801
Alignment:
Q  414 ttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaa 493  Q
    |||||| | |||||||||||| |||||| | | |   |||||||| || |||||||||| ||||||||||||||||||||    
T  12562722 ttgttctatggtggtttggatattattaaatatttagttattacgctctttccaaaccacccaaacacaaagtaaccaaa 12562801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 18634433 - 18634491
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtac 213  Q
    ||||||||||||| ||||||||||||||||| |||||| ||| | |||| ||| |||||    
T  18634433 aagacataaaaatggaatatattaacaacggcagtgagccacttcagtataaggtgtac 18634491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 9510109 - 9510329
Alignment:
Q  1 ccatgccatgactcaaactaaagagcttcgtgcctttcagttatgcaagttagagtacacgcaatcgcaataataaacaagtagttggattgtttgattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9510109 ccatgccatgactcaaactaaagagcttcgtgcctttcagttatgcaagttagagtacacgcaatcgcaataataaacaagtagttggattgtttgattt 9510208  T
Q  101 tattttatatgtaaaatattaaataaataatccatcttagtaattaa-nnnnnnnaagacataaaaatagaatatattaacaacggtagtgagtcaccta 199  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||        |||||||||||||  |||||||||||||||| |||||||||||||    
T  9510209 tattttatatgtgaaatattaaataaataatccatcttagtaattaattttttttaagacataaaaatgaaatatattaacaacggcagtgagtcaccta 9510308  T
Q  200 agtacaagatgtactaaaagt 220  Q
    | |||||||||||||||||||    
T  9510309 aatacaagatgtactaaaagt 9510329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 236 - 529
Target Start/End: Original strand, 9510318 - 9510611
Alignment:
Q  236 tgtactaaaagtgtcacccctaaaacagtcagtcatacaatgaaggaaacagaagcaaaggtcagtcgatacacaaacataataaagggtccgaccacca 335  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  9510318 tgtactaaaagtgtcacccctaaaacagtcagtcatataatgaaggaaacagaagtaaaggtcagtcgatacccaaacataataaagggtccgaccacca 9510417  T
Q  336 tctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttactttatcggctagttgttcaacggtggtttggatg 435  Q
    ||| |||||||| | || |||| |||| || |||||||||| |||||| |||||||||||  ||||||| || ||||||||||||| ||||||||||||     
T  9510418 tctgtgagtaccctgcacaaaagtggccttattagctttaagccaccaaaaagagtgaaactttactttttctgctagttgttcaatggtggtttggata 9510517  T
Q  436 ttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatgattgacgagcctttgagtgac 529  Q
    || ||||  ||| | || |||||||| ||| |||||||||| |||||| |||||||||||||||| || || ||||||||||||||||||||||    
T  9510518 ttgttatgaaatttgttgttacgttcgttcgaaaccaaccagacacaatgtaaccaaataagttgaaggaaggattgacgagcctttgagtgac 9510611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 236 - 530
Target Start/End: Original strand, 6244671 - 6244965
Alignment:
Q  236 tgtactaaaagtgtcacccctaaaacagtcagtcatacaatgaaggaaacagaagcaaaggtcagtcgatacacaaacataataaagggtccgaccacca 335  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  6244671 tgtactaagagtgccacccctaaaatagtcagtcatacaatgagggaaacagaagcaaaggtcagtcgatacccaaacataataaagggtctgaccacca 6244770  T
Q  336 tctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttactttatcggctagttgttcaacggtggtttggatg 435  Q
    ||| ||||||||||||| |||| | || || |||||||||| ||| || |||||||||||  | ||||| || ||||||||||| | ||||||||||||     
T  6244771 tctgtgagtaccgtacacaaaagtagccttattagctttaagccatcaaaaagagtgaaacttcactttttctgctagttgttcgatggtggtttggata 6244870  T
Q  436 ttattatag-aatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatgattgacgagcctttgagtgacc 530  Q
    || |||| | ||||| || ||||||||| | ||||||||||| ||||||||||||||||||||||| || || ||||||||||||||| |||||||    
T  6244871 ttgttattgaaatctgttgttacgttca-tacaaaccaaccagacacaaagtaaccaaataagttgaaggaaggattgacgagcctttaagtgacc 6244965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 268 - 530
Target Start/End: Original strand, 25900590 - 25900850
Alignment:
Q  268 tcatacaatgaaggaaacagaagcaaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgt 367  Q
    ||||||||||| ||| ||| || ||||||||| ||||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||||| |||| || |    
T  25900590 tcatacaatga-ggagacaaaaacaaaggtcaatcgatacccaaacataataaagggtccaaccac-atctttgagaaccgtacataaaagtggccttat 25900687  T
Q  368 ta-gctttaaaccaccataaagagtgaaatcttactttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattcc 466  Q
    || ||||||| |||| | || |||| |||| | || || ||  |||||||||||| | ||| |||||| |||||||  | ||| || |||||||||||||    
T  25900688 taagctttaagccacaa-aaggagtaaaatttaaccttttctactagttgttcaatgttggattggatattattatgaagtctgttgttacgttcattcc 25900786  T
Q  467 aaaccaaccaaacacaaagtaaccaaataagttggagaaatgattgacgagcctttgagtgacc 530  Q
    ||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||  |||||||    
T  25900787 aaaccaaccaggcacaaagtaaccatataagttgaagaaatgattgacgagccttcaagtgacc 25900850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 6244617 - 6244678
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaa 216  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6244617 aagacataaaaattgaatatattaacaacggcagtgagtcacctaagtacaagatgtactaa 6244678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 494
Target Start/End: Complemental strand, 6985292 - 6985098
Alignment:
Q  300 gtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatctt 399  Q
    |||||||| |||||| |  | ||||||||||||||||||||||  |||||||| |||  |||||||  ||||||| | |||||||||||| || ||| ||    
T  6985292 gtcgatacccaaacaaagcatagggtccgaccaccatctttgataaccgtacacaaatgtggctttactagcttttagccaccataaagaatgtaatttt 6985193  T
Q  400 actttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaat 494  Q
    ||||  || | ||    ||||| ||  |||||||| |||||| | | ||| || || |||||||||||||||| ||| ||||||||||| |||||    
T  6985192 acttgttctgataaaccttcaatggatgtttggatattattaaaaagtctgttgttgcgttcattccaaaccatccacacacaaagtaatcaaat 6985098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 383
Target Start/End: Original strand, 15438746 - 15438838
Alignment:
Q  291 caaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccacca 383  Q
    ||||||||||||||||| |||||| |  | |||||||||||||||||| | |||| |||||| ||||||||  || ||||| |||| ||||||    
T  15438746 caaaggtcagtcgatacccaaacaaagcatagggtccgaccaccatctcttagtatcgtacacaaaattggtgttattagccttaagccacca 15438838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 383
Target Start/End: Original strand, 15530050 - 15530142
Alignment:
Q  291 caaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccacca 383  Q
    ||||||||||||||||| |||||| |  | |||||||||||||||||| | |||| |||||| ||||||||  || ||||| |||| ||||||    
T  15530050 caaaggtcagtcgatacccaaacaaagcatagggtccgaccaccatctcttagtatcgtacacaaaattggtgttattagccttaagccacca 15530142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 25900493 - 25900555
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaa 217  Q
    ||||||||||||| ||||| ||||| | | |||||||  ||||||||||||||||||||||||    
T  25900493 aagacataaaaatggaataaattaatatcagtagtgaaccacctaagtacaagatgtactaaa 25900555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 519
Target Start/End: Original strand, 26658707 - 26658779
Alignment:
Q  447 tctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatgattgacgagcc 519  Q
    ||||||||||||||||||||| || |||||||||||||| | |||||  |  |||||||||||| ||| ||||    
T  26658707 tctattattacgttcattccacactaaccaaacacaaagaagccaaagtaactggagaaatgatcgacaagcc 26658779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 396
Target Start/End: Original strand, 9492274 - 9492360
Alignment:
Q  309 caaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaat 396  Q
    |||||| | ||||||||||||||||||||| |||| | |||||| |||  || | |||||||| |||| |||||||||||| ||||||    
T  9492274 caaacaaactaaagggtccgaccaccatctctgag-aacgtacacaaatgtgacattgttagccttaagccaccataaagaatgaaat 9492360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 491
Target Start/End: Original strand, 25192793 - 25192866
Alignment:
Q  418 tcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaacca 491  Q
    |||| ||| |||||||| |||||| | | |||||| || |||||||||||||| | ||| ||||||||||||||    
T  25192793 tcaatggtagtttggatattattaaatattctattgttgcgttcattccaaactacccagacacaaagtaacca 25192866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 493
Target Start/End: Complemental strand, 42579887 - 42579806
Alignment:
Q  412 agttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaa 493  Q
    |||||||| | ||||||||||||||||||| | | ||||| ||||||  |||||||||||| ||| | ||| || |||||||    
T  42579887 agttgttctatggtggtttggatgttattaaatattctatcattacgagcattccaaaccacccagaaacatagcaaccaaa 42579806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 1636519 - 1636555
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtga 191  Q
    ||||||||||||  |||||||||||||||||||||||    
T  1636519 aagacataaaaactgaatatattaacaacggtagtga 1636555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 530
Target Start/End: Original strand, 3938963 - 3939031
Alignment:
Q  462 attccaaaccaaccaaacacaaagtaaccaaataagttggagaaatgattgacgagcctttgagtgacc 530  Q
    ||||||||| | |||||||||||| ||||||||||| || ||||| |||  ||| ||||| ||||||||    
T  3938963 attccaaacgatccaaacacaaagcaaccaaataagctgaagaaaggatctacgcgccttcgagtgacc 3939031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 160; Significance: 5e-85; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 236 - 530
Target Start/End: Original strand, 20543608 - 20543901
Alignment:
Q  236 tgtactaaaagtgtcacccctaa-aacagtcagtcatacaatgaaggaaacagaagcaaaggtcagtcgatacacaaacataataaagggtccgaccacc 334  Q
    ||||||||||||| ||||||||| ||||||||  ||||||| | || |  || |||||||||||  || | || || |||||||||||||||||||||||    
T  20543608 tgtactaaaagtgccacccctaataacagtcaaacatacaaagtag-agtca-aagcaaaggtcgatctaaacccagacataataaagggtccgaccacc 20543705  T
Q  335 atctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttactttatcggctagttgttcaacggtggtttggat 434  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||    
T  20543706 atctttgggtaccatacataaaattggctttgttagctttaagccaccataaagaatgaaatctaactttatctgctagttgttcaaccgtggtttggat 20543805  T
Q  435 gttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatgattgacgagcctttgagtgacc 530  Q
     |||||| | | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  20543806 attattaaaaagtctattattacgttcattccaaaccacccaaacacaaagtaaccaaataagttgaagaaatggctgacgagcctttgagtgacc 20543901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 236 - 530
Target Start/End: Original strand, 27299688 - 27299981
Alignment:
Q  236 tgtactaaaagtgtcacccctaaaacagtcagtcatacaatgaaggaaacagaagcaaaggtcagtcgatacacaaacataataaagggtccgaccacca 335  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||| |||||||    
T  27299688 tgtactaaaactgccacccctaaaacagtcagtcatacaatgaaggaaacagaagtaaatgtcagttgatacccaaacataataaagggtccaaccacca 27299787  T
Q  336 tctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttactttatcggctagttgttcaacggtggtttggatg 435  Q
    ||| |||||||||| || |||| |||  || |||||||||| |||||| |||||||||||  ||||||| || ||  | ||||||| ||||||||||||     
T  27299788 tctgtgagtaccgtgcacaaaagtggtcttattagctttaagccaccaaaaagagtgaaactttactttttctgccggctgttcaatggtggtttggata 27299887  T
Q  436 ttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatgattgacgagcctttgagtgacc 530  Q
    || ||||  ||| | || |||| ||| |||||||||||||| |||||||| |||||||||||||| || || ||||||||||||||| |||||||    
T  27299888 ttgttatgaaatatgttgttacattcgttccaaaccaaccagacacaaag-aaccaaataagttgaaggaaggattgacgagcctttaagtgacc 27299981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 236 - 530
Target Start/End: Complemental strand, 43517347 - 43517054
Alignment:
Q  236 tgtactaaaagtgtcaccccta-aaacagtcagtcatacaatgaaggaaacagaagcaaaggtcagtcgatacacaaacataataaagggtccgaccacc 334  Q
    |||||||||||||||||||||| ||| |||||  |||||||||||| |  || | || | |||| || ||||| |||||||||||||||||  |||||||    
T  43517347 tgtactaaaagtgtcacccctagaaatagtcaaacatacaatgaag-agtca-atgcgatggtcggttgatacccaaacataataaagggtatgaccacc 43517250  T
Q  335 atctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttactttatcggctagttgttcaacggtggtttggat 434  Q
    ||||||| ||||||||||| |||||||| || ||||| || | |||||| ||||||||| || | ||||| ||  ||||  |||| | ||| ||||||||    
T  43517249 atctttgtgtaccgtacatcaaattggccttattagcctttagccaccacaaagagtgatatttaactttttctactagccgttccatggttgtttggat 43517150  T
Q  435 gttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatgattgacgagcctttgagtgacc 530  Q
     |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| ||||||||||    
T  43517149 attattataaagtctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttgaaggaaggattgacgagcccttgagtgacc 43517054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 20543554 - 20543619
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    ||||||||||||| ||||||||||||||||| |||||  |||||||||||||||||||||||||||    
T  20543554 aagacataaaaatggaatatattaacaacggcagtgaaacacctaagtacaagatgtactaaaagt 20543619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 493
Target Start/End: Original strand, 19119658 - 19119856
Alignment:
Q  295 ggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaa 394  Q
    ||||||||||||| || |||||| ||| |||| |||||||| || | |||  ||| || ||| ||| | || |||||||||| ||||||||| || ||||    
T  19119658 ggtcagtcgatacccagacataacaaaaggtctgaccaccaactctaagtgtcgtgcacaaacttgacattattagctttaagccaccataacgaatgaa 19119757  T
Q  395 atcttactttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaa 493  Q
    || | ||||| |     |||||||| | ||||| |||||| |||||| | | | | |||||||||||||||||||||| ||| ||||||||||||||||    
T  19119758 atttaactttttataagagttgttctatggtggcttggatattattaaatattttgttattacgttcattccaaaccatccagacacaaagtaaccaaa 19119856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 43517401 - 43517336
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    ||||||||||||| ||||||||||||||| | |||||  |||||||||||||||||||||||||||    
T  43517401 aagacataaaaatggaatatattaacaacagcagtgaaacacctaagtacaagatgtactaaaagt 43517336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 408
Target Start/End: Original strand, 52814069 - 52814181
Alignment:
Q  296 gtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaa 395  Q
    ||||||| |||| ||||||  ||||||||| ||||||||| ||||||| |||||||| |||| ||  |||||| ||||||| |||||| || || |||||    
T  52814069 gtcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgattttgttggctttaagccaccacaacgaatgaaa 52814168  T
Q  396 tcttactttatcg 408  Q
    | |||||||||||    
T  52814169 ttttactttatcg 52814181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 27299634 - 27299697
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaa 218  Q
    ||||||||||||| |||||||||||| |||  ||||||||| ||||||||||||||||||||||    
T  27299634 aagacataaaaatggaatatattaactacgacagtgagtcatctaagtacaagatgtactaaaa 27299697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 48029228 - 48029297
Alignment:
Q  292 aaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattgg 361  Q
    |||||||||| ||||| |||||| || ||| ||||||||||||||||||||| |||||||| ||||||||    
T  48029228 aaaggtcagttgatacccaaacaaaacaaatggtccgaccaccatctttgagaaccgtacacaaaattgg 48029297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 407
Target Start/End: Complemental strand, 41879598 - 41879487
Alignment:
Q  296 gtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaa 395  Q
    ||||||||||||  | ||| | |||||||| |||||||||  |||||| ||||||||||||| ||| ||| |||||||| || ||||| || ||||||||    
T  41879598 gtcagtcgatacctagacaaagtaaagggttcgaccaccagttttgagaaccgtacataaaagtggttttattagcttttaatcaccacaacgagtgaaa 41879499  T
Q  396 tcttactttatc 407  Q
    | | ||||||||    
T  41879498 tttaactttatc 41879487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 407
Target Start/End: Complemental strand, 32348871 - 32348755
Alignment:
Q  291 caaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagag 390  Q
    ||||||| ||||||||| |||||| |  ||||| |||||||||||||| |||| |||||||| |||  ||||  | |||||||| | ||||||  | |||    
T  32348871 caaaggttagtcgatacccaaacaaatcaaaggatccgaccaccatctctgagaaccgtacacaaacatggcggtcttagctttcagccaccaatacgag 32348772  T
Q  391 tgaaatcttactttatc 407  Q
    |||||| ||||||||||    
T  32348771 tgaaattttactttatc 32348755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 34104919 - 34104967
Alignment:
Q  295 ggtcagtcgatacacaaacataataaagggtccgaccaccatctttgag 343  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| ||||    
T  34104919 ggtcagtcgatacccaaacataacaaagggtccgaccaccatctctgag 34104967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 53569591 - 53569655
Alignment:
Q  296 gtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattg 360  Q
    |||||| ||||| |||||| | ||||||||||||||||||||| |||| |||||||| |||||||    
T  53569591 gtcagttgatacccaaacaaagtaaagggtccgaccaccatctctgagaaccgtacacaaaattg 53569655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 383
Target Start/End: Original strand, 8081660 - 8081755
Alignment:
Q  288 aagcaaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccacca 383  Q
    ||||||||||  |||||||| |||||| | ||| ||||||||||||||||| ||||| || || | ||||||| | ||||||||||| | ||||||    
T  8081660 aagcaaaggtttgtcgatactcaaacaaagtaatgggtccgaccaccatctatgagtgccataaacaaaattgacattgttagctttcagccacca 8081755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 396
Target Start/End: Original strand, 42272534 - 42272621
Alignment:
Q  309 caaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaat 396  Q
    |||||||| ||| ||||||||||||||||| ||| |||||| || |||  |||| || ||||| |||| |||||||||||| ||||||    
T  42272534 caaacatactaaggggtccgaccaccatctctgaataccgttcacaaatgtggcatttttagccttaagccaccataaagaatgaaat 42272621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 374
Target Start/End: Original strand, 55261568 - 55261650
Alignment:
Q  292 aaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagcttt 374  Q
    |||||||||||||||| ||  || | ||| |||||| |||||||||| |||| ||| |||| |||| ||||||||||||||||    
T  55261568 aaaggtcagtcgatacccagtcaaagtaacgggtccaaccaccatctctgagaaccatacacaaaagtggctttgttagcttt 55261650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 357
Target Start/End: Original strand, 9690001 - 9690065
Alignment:
Q  293 aaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaa 357  Q
    |||||| |||||||| |||||| | |||||||| ||||||||||||||||| ||| |||| ||||    
T  9690001 aaggtcggtcgatacccaaacaaagtaaagggttcgaccaccatctttgagaaccatacacaaaa 9690065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 40483745 - 40483845
Alignment:
Q  296 gtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaa 395  Q
    ||||||| | || |||||| ||||| ||||||||||||||||| |||| ||||| || |||  |||| || ||| |||||| |||||||| ||| |||||    
T  40483745 gtcagtcaagacccaaacacaataaggggtccgaccaccatctctgagaaccgtgcacaaacgtggcattattaactttaagccaccatatagaatgaaa 40483844  T
Q  396 t 396  Q
    |    
T  40483845 t 40483845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 389
Target Start/End: Complemental strand, 56338058 - 56337963
Alignment:
Q  294 aggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaaga 389  Q
    |||||||||||||| |||||| |  ||  ||||| ||||||||||||||| ||| || | |||| |||| ||||||||||| | |||||| |||||    
T  56338058 aggtcagtcgatacccaaacaaagcaaccggtccaaccaccatctttgagaaccataaacaaaagtggcattgttagcttttagccaccacaaaga 56337963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 52619626 - 52619557
Alignment:
Q  292 aaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattgg 361  Q
    |||||||||||||||| ||||||    |||||||||||||||||||| ||||  | ||||| ||||||||    
T  52619626 aaaggtcagtcgatacccaaacactgaaaagggtccgaccaccatctctgagagctgtacacaaaattgg 52619557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 357
Target Start/End: Complemental strand, 18443480 - 18443416
Alignment:
Q  293 aaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaa 357  Q
    ||||||||||||||| |||||| | |||||||| |||||||||| | |||| || ||||| ||||    
T  18443480 aaggtcagtcgatactcaaacaaagtaaagggttcgaccaccatttctgagaactgtacacaaaa 18443416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 309 - 530
Target Start/End: Complemental strand, 5100182 - 5099961
Alignment:
Q  309 caaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttactttatcg 408  Q
    |||||| |||||||||||||||||||||| ||| ||||| ||||| ||||||||||| ||||||| || |||||||||||| |||||||  ||||||||     
T  5100182 caaacaaaataaagggtccgaccaccatcgttgggtaccatacatgaaattggctttattagcttgaagccaccataaagaatgaaatcgaactttatct 5100083  T
Q  409 gctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatg 508  Q
    ||||| |  ||||| ||||||||||| |||||| | |  |||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||    
T  5100082 gctagattgtcaactgtggtttggatattattaaaaagcctattattacgttcgttccaaaccacccaaacacaaagtaaccaaataagttgaagaaatg 5099983  T
Q  509 attgacgagcctttgagtgacc 530  Q
    | ||||||||||||||||||||    
T  5099982 actgacgagcctttgagtgacc 5099961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 309 - 530
Target Start/End: Complemental strand, 21368461 - 21368242
Alignment:
Q  309 caaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttactttatcg 408  Q
    |||||| |||||||| ||||||||||||||||| ||||| ||||| || || ||||||||||||| || |||||||||||| |||||||  ||||||||     
T  21368461 caaacaaaataaaggatccgaccaccatctttgggtaccatacatgaattttgctttgttagcttgaagccaccataaagaatgaaatcgaactttatct 21368362  T
Q  409 gctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatg 508  Q
    |||||||||||||| ||||||||||| |||||| | | ||||||||||||||| |||||||||| ||||||||  ||||||||||||||||| || ||||    
T  21368361 gctagttgttcaactgtggtttggatattattaaaaagtctattattacgttcgttccaaaccacccaaacac--agtaaccaaataagttgaaggaatg 21368264  T
Q  509 attgacgagcctttgagtgacc 530  Q
    | ||||||||||||||||||||    
T  21368263 actgacgagcctttgagtgacc 21368242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 295 - 530
Target Start/End: Complemental strand, 979646 - 979411
Alignment:
Q  295 ggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaa 394  Q
    |||| |||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||  || ||||| || | |||| | |||||||||     
T  979646 ggtcggtcgatacccaaacataataaaggatccgaccaccatctttgtgtaccgtacataaaattgggcttattagcctttagccactacaaagagtgat 979547  T
Q  395 atcttactttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaat 494  Q
    || | | ||| ||  || | ||||| | ||| ||||| || |||||||| | ||||||||||||||||||||||| || |||||| ||||||||| ||||    
T  979546 atttaaatttttctacttgctgttccatggttgtttgaatattattataaagtctattattacgttcattccaaatcagccaaacgcaaagtaactaaat 979447  T
Q  495 aagttggagaaatgattgacgagcctttgagtgacc 530  Q
    |||||| || |||||||| |||||| ||||||||||    
T  979446 aagttgaaggaatgattgtcgagcccttgagtgacc 979411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 291 - 506
Target Start/End: Original strand, 379490 - 379705
Alignment:
Q  291 caaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagag 390  Q
    ||||||||||||||||| ||||||  | ||||||||||||||||| || |||||| |||||| |||||| || || ||||| |||| ||||||||| ||     
T  379490 caaaggtcagtcgatacccaaacaatacaaagggtccgaccaccaactctgagtatcgtacacaaaattagcgttcttagccttaagccaccataacgaa 379589  T
Q  391 tgaaatcttactttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaacc 490  Q
    |||||| | ||||| ||    ||||| || |||||||||||| | |||||| | | |||||| |||||  ||||||| |||| ||| |||| ||||||||    
T  379590 tgaaatttaactttctctaaaagttggtctacggtggtttgggtattattaaatattctattgttacgagcattccagaccatccagacaccaagtaacc 379689  T
Q  491 aaataagttggagaaa 506  Q
    |||| || ||||||||    
T  379690 aaatgagctggagaaa 379705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 412 - 503
Target Start/End: Complemental strand, 34369698 - 34369607
Alignment:
Q  412 agttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggag 503  Q
    ||||| ||||||| ||||||||||||  || | ||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||    
T  34369698 agttgatcaacggaggtttggatgttcctaaataatctgttattccgttcattccaaacgaaccaaacacaaagtaatcaaataagctggag 34369607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 292 - 358
Target Start/End: Complemental strand, 18718510 - 18718444
Alignment:
Q  292 aaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaat 358  Q
    |||||||| ||||||| ||||||||||||||| |||||||||||||||| || ||||||||||||||    
T  18718510 aaaggtcaatcgatacccaaacataataaaggatccgaccaccatctttaagaaccgtacataaaat 18718444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 325 - 494
Target Start/End: Original strand, 475824 - 475993
Alignment:
Q  325 tccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttactttatcggctagttgttcaacgg 424  Q
    ||||||||||| ||||||| |||||||| |||  |||||||  ||||||| | ||||||||||||||| ||| ||||||| || | ||    ||||| ||    
T  475824 tccgaccaccacctttgagaaccgtacacaaatgtggctttactagcttttagccaccataaagagtgtaattttactttttctgataagccttcaatgg 475923  T
Q  425 tggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaat 494  Q
      |||||| | |||||| | | ||| || || |||||||||||||||| ||| |||||||||||||||||    
T  475924 atgtttgggtattattaaaaagtctgttgttgcgttcattccaaaccatccacacacaaagtaaccaaat 475993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 35100975 - 35101040
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    ||||||||||||| |||||||||||||||||  ||||  |||||||||||||||||||||||||||    
T  35100975 aagacataaaaatggaatatattaacaacggcggtgaaacacctaagtacaagatgtactaaaagt 35101040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 979759 - 979694
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    ||||||||||||| |||||||||||||| || |||||  || ||||||||||||||||||||||||    
T  979759 aagacataaaaatggaatatattaacaatggcagtgaaacatctaagtacaagatgtactaaaagt 979694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 21368586 - 21368522
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    ||||||||||||| ||||||||||||||||| || ||  |||||||||||||||||||||||||||    
T  21368586 aagacataaaaatggaatatattaacaacggcagcgaa-cacctaagtacaagatgtactaaaagt 21368522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 383
Target Start/End: Complemental strand, 14055201 - 14055110
Alignment:
Q  292 aaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccacca 383  Q
    |||||||| || |||| |||||| ||||||||||||| |||||||||||||| ||| |||| ||||||||  || ||| |||| ||||||||    
T  14055201 aaaggtcaatcaatacccaaacaaaataaagggtccggccaccatctttgagaaccatacacaaaattggtgttattatctttcaaccacca 14055110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 5100307 - 5100246
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaa 217  Q
    ||||||||||||| ||||||||||||||||| |||||  | ||||||||||||||||||||||    
T  5100307 aagacataaaaatggaatatattaacaacggcagtga-acgcctaagtacaagatgtactaaa 5100246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 383
Target Start/End: Original strand, 24177191 - 24177282
Alignment:
Q  292 aaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccacca 383  Q
    |||||||||||||||  ||| || || || | |||| |||||||||| |||| ||| ||||||||| |||||||||||||||| | ||||||    
T  24177191 aaaggtcagtcgatatccaagcaaaacaacgagtccaaccaccatctctgagaaccatacataaaagtggctttgttagctttcagccacca 24177282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 18718630 - 18718568
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaa 217  Q
    ||||||||||||| ||||| ||||||| | |||||||  | ||||||||||||||||||||||    
T  18718630 aagacataaaaatggaataaattaacatcagtagtgaaccgcctaagtacaagatgtactaaa 18718568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 374849 - 374768
Alignment:
Q  296 gtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaa 377  Q
    |||||||||||  ||||||  ||||||||| ||||||||| ||||||| |||||||| |||| ||  |||||| ||||||||    
T  374849 gtcagtcgatatccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgattttgttggctttaaa 374768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 291 - 404
Target Start/End: Complemental strand, 5909626 - 5909513
Alignment:
Q  291 caaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagag 390  Q
    ||||||| ||| ||||| |||||| |  |||||||||||||||||||| |||| | |||||| |||| |||| || || ||||| | ||||||  | |||    
T  5909626 caaaggttagttgatacccaaacaaatcaaagggtccgaccaccatctctgagaatcgtacacaaaagtggcgttatttgctttcagccaccaatacgag 5909527  T
Q  391 tgaaatcttacttt 404  Q
    |||||| |||||||    
T  5909526 tgaaattttacttt 5909513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 418 - 491
Target Start/End: Original strand, 17431216 - 17431289
Alignment:
Q  418 tcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaacca 491  Q
    |||| ||| |||| ||| |||||| | | |||||| ||||||||||||||||| ||||| ||||||||||||||    
T  17431216 tcaatggtagttttgatattattaaatattctattgttacgttcattccaaactaaccagacacaaagtaacca 17431289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 22179542 - 22179482
Alignment:
Q  291 caaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtac 351  Q
    ||||||||||||||||| |||||| | |||| |||||||| ||||||| |||| |||||||    
T  22179542 caaaggtcagtcgatacccaaacaaattaaatggtccgactaccatctctgagaaccgtac 22179482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 383
Target Start/End: Complemental strand, 13735450 - 13735359
Alignment:
Q  292 aaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccacca 383  Q
    ||||||||||| |||| |||||| | |||||||| |||||||||||| | ||  ||||||| |||| |||  || |||||||| ||||||||    
T  13735450 aaaggtcagtcaatacccaaacacagtaaagggttcgaccaccatctctaagagccgtacacaaaagtggtattattagcttttaaccacca 13735359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 382
Target Start/End: Complemental strand, 27679760 - 27679669
Alignment:
Q  291 caaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccacc 382  Q
    |||||||| |||||||| ||||||||  | |||||||||||||||| | |||| |||||||| |||| || | || ||||| |||| |||||    
T  27679760 caaaggtcggtcgatacccaaacatagcatagggtccgaccaccatttctgagaaccgtacacaaaagtgacattattagccttaagccacc 27679669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 17431093 - 17431133
Alignment:
Q  295 ggtcagtcgatacacaaacataataaagggtccgaccacca 335  Q
    ||||||||||||| ||||||||| | |||||||||||||||    
T  17431093 ggtcagtcgatacccaaacataacatagggtccgaccacca 17431133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 35101080 - 35101128
Alignment:
Q  288 aagcaaaggtcagtcgatacacaaacataataaagggtccgaccaccat 336  Q
    |||||||||||  | ||||| || |||||||||||||||||||||||||    
T  35101080 aagcaaaggtcgattgatactcagacataataaagggtccgaccaccat 35101128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 4e-61; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 303 - 530
Target Start/End: Complemental strand, 40514257 - 40514030
Alignment:
Q  303 gatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttact 402  Q
    ||||| |||||||||||||||||||||||||||| |||| | |||||||||||| ||||| || ||||| || | |||||| ||||||||| || | |||    
T  40514257 gatacccaaacataataaagggtccgaccaccatttttgtgaaccgtacataaagttggccttattagcctttagccaccacaaagagtgatatttaact 40514158  T
Q  403 ttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttgga 502  Q
    || ||  |||||||||| | |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  40514157 ttttctactagttgttccatggtggtttggatattattatagagtctattattacgttcattccaaaccaaccaaacacatagtaaccaaataagttgta 40514058  T
Q  503 gaaatgattgacgagcctttgagtgacc 530  Q
    |||| |||||||| |||  |||||||||    
T  40514057 gaaaggattgacgggcccgtgagtgacc 40514030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 268 - 530
Target Start/End: Original strand, 34828974 - 34829235
Alignment:
Q  268 tcatacaatgaaggaaacagaagcaaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgt 367  Q
    ||||||||||| ||| ||| |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| | ||||||||||| |||| || |    
T  34828974 tcatacaatga-ggagacaaaagcaaaggtcaatcgatactcaaacataataaagggttcgaccaccatctttgagaatcgtacataaaagtggccttat 34829072  T
Q  368 tagctttaaaccaccataaagagtgaaatcttactttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattcca 467  Q
    ||||||||| |||||| || ||||||||| | ||||| ||  |||||||||||| | |||||||||| |||||||  | ||| || |||| |||||||||    
T  34829073 tagctttaagccaccaaaaggagtgaaatttaactttttctactagttgttcaatgttggtttggatattattatgaagtctgttgttacattcattcca 34829172  T
Q  468 aaccaaccaaacacaaagtaaccaaataagttggagaaatgattgacgagcctttgagtgacc 530  Q
    ||||||| |  ||||||||||| | |||||||| ||||| |||||||||||||| ||||||||    
T  34829173 aaccaacaaggcacaaagtaactatataagttgaagaaaggattgacgagccttcgagtgacc 34829235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 303 - 515
Target Start/End: Original strand, 20857545 - 20857757
Alignment:
Q  303 gatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttact 402  Q
    ||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| || | |||||| ||||||||  || | |||    
T  20857545 gatacccaaatataataaagggtccgaccaccatctttgtgtaccgtacataaaattggccttattagccttgagccaccacaaagagtggtatttaact 20857644  T
Q  403 ttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttgga 502  Q
    || ||  |||||||||| | ||| |||||||| |||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |    
T  20857645 ttttctactagttgttccatggttgtttggatattattataaagtctattattacgttcattccaaaccaaccagacacatagtaaccaaataagttgta 20857744  T
Q  503 gaaatgattgacg 515  Q
    | || ||||||||    
T  20857745 ggaaggattgacg 20857757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 427 - 515
Target Start/End: Original strand, 20857941 - 20858029
Alignment:
Q  427 gtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatgattgacg 515  Q
    |||||||| |||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || || ||||||||    
T  20857941 gtttggatattattataaagtctattattacgttcattccaaaccaaccagacacatagtaaccaaataagttgtaggaaggattgacg 20858029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 291 - 494
Target Start/End: Complemental strand, 35216464 - 35216261
Alignment:
Q  291 caaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagag 390  Q
    ||||||||||||||||| ||||||    | ||||||| |||||||||| ||||||||||||| ||||||||| || ||||| |||| |||||||||  |     
T  35216464 caaaggtcagtcgatacccaaacaatgcatagggtccaaccaccatctctgagtaccgtacacaaaattggcgttcttagccttaagccaccataacaaa 35216365  T
Q  391 tgaaatcttactttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaacc 490  Q
    |||||| | ||||| ||    ||||| || |||||||||||| | |||||| | | |||||| |||||  ||||||| |||| ||| |||| ||||||||    
T  35216364 tgaaatttaactttctctaaaagttggtctacggtggtttgggtattattaaatattctattgttacgagcattccagaccacccagacaccaagtaacc 35216265  T
Q  491 aaat 494  Q
    ||||    
T  35216264 aaat 35216261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 292 - 386
Target Start/End: Complemental strand, 46249419 - 46249325
Alignment:
Q  292 aaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataa 386  Q
    |||||||||||||||| |||||| | |||||||||||||||||||||||| | |||||||| ||||||||  || ||| |||| |||||||||||    
T  46249419 aaaggtcagtcgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccgtacacaaaattggtgttattaacttttaaccaccataa 46249325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 292 - 383
Target Start/End: Original strand, 14306850 - 14306941
Alignment:
Q  292 aaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccacca 383  Q
    |||||||||||||||| |||||| |||||||||| |||||||||||| |||| |||||||| |||||||   || |||||||| ||||||||    
T  14306850 aaaggtcagtcgatacccaaacaaaataaagggttcgaccaccatctctgagaaccgtacacaaaattgatgttattagcttttaaccacca 14306941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 40514377 - 40514312
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    ||||||||||||| | ||||||||||||||| |||||  |||||||||||||||||||||||||||    
T  40514377 aagacataaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtactaaaagt 40514312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 296 - 407
Target Start/End: Original strand, 7935524 - 7935635
Alignment:
Q  296 gtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaa 395  Q
    |||||||||||| || |||  | ||||||| |||| |||| ||||||| |||||||| |||| ||| |||||| ||||||| |||||| ||||| |||||    
T  7935524 gtcagtcgatacccagacaataaaaagggttcgactaccaactttgagaaccgtacacaaaagtggttttgttggctttaagccaccacaaagaatgaaa 7935623  T
Q  396 tcttactttatc 407  Q
    | ||||||||||    
T  7935624 ttttactttatc 7935635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 407
Target Start/End: Complemental strand, 13700684 - 13700573
Alignment:
Q  296 gtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaa 395  Q
    |||||||||||| ||||||  ||||||||| ||||||||| ||||||| | |||||| |||| ||  ||||||| |||||| |||||| ||  | |||||    
T  13700684 gtcagtcgatacccaaacaatataaagggttcgaccaccaactttgagaaacgtacacaaaagtgattttgttaactttaagccaccacaagaaatgaaa 13700585  T
Q  396 tcttactttatc 407  Q
    | ||||||||||    
T  13700584 ttttactttatc 13700573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 4963942 - 4964007
Alignment:
Q  292 aaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaa 357  Q
    |||||||||||||||| || ||| | ||||||||||||||||||||| |||| |||||||| ||||    
T  4963942 aaaggtcagtcgatacccagacaaagtaaagggtccgaccaccatctctgagaaccgtacacaaaa 4964007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 494
Target Start/End: Original strand, 11237420 - 11237586
Alignment:
Q  328 gaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttactttatcggctagttgttcaacggtgg 427  Q
    |||||||| ||||||| |||||||| |||  || ||||  ||||||| | ||||||||||||||| ||| |||||||||| | ||    ||||| ||  |    
T  11237420 gaccaccacctttgagaaccgtacacaaatgtgactttactagcttttagccaccataaagagtgcaattttactttatctgataagccttcaatggatg 11237519  T
Q  428 tttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaat 494  Q
    ||||| | |||||| | | ||| || || |||||||||||||||| | | ||||||| |||||||||    
T  11237520 tttgggtattattaaaaagtctgttgttgcgttcattccaaaccatctacacacaaaataaccaaat 11237586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 494
Target Start/End: Complemental strand, 31921904 - 31921710
Alignment:
Q  300 gtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatctt 399  Q
    |||||||| |||||| |  | ||||| ||||||||| || |||  |||||||| ||| ||||||||  ||||||| | |||||||||||| || ||| ||    
T  31921904 gtcgatacccaaacaaagcatagggttcgaccaccacctctgataaccgtacacaaatttggctttactagcttttagccaccataaagaatgtaatttt 31921805  T
Q  400 actttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaat 494  Q
    ||||| || | ||    |||||  |  |||||||| |||||| | | ||| || || |||||||||||||||| ||| ||||| |||||||||||    
T  31921804 actttttctgataaaccttcaattgatgtttggatattattaaaaagtctgttgttgcgttcattccaaaccatccacacacatagtaaccaaat 31921710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 34828877 - 34828939
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaa 217  Q
    |||||||||||||  |||| ||||||| |||||||||  ||||||||||||||||||| ||||    
T  34828877 aagacataaaaatgtaataaattaacatcggtagtgaaccacctaagtacaagatgtaataaa 34828939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 451 - 500
Target Start/End: Complemental strand, 46249260 - 46249211
Alignment:
Q  451 ttattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttg 500  Q
    ||||||||||||||||||| ||||||||||||||||| ||| || |||||    
T  46249260 ttattacgttcattccaaatcaaccaaacacaaagtagccatattagttg 46249211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 418 - 491
Target Start/End: Original strand, 53941023 - 53941096
Alignment:
Q  418 tcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaacca 491  Q
    |||| ||| |||||||| |||||| | | |||||| ||||||||||||||||| | ||| ||||||||||||||    
T  53941023 tcaatggtagtttggatattattaaatattctattgttacgttcattccaaactacccatacacaaagtaacca 53941096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 530
Target Start/End: Original strand, 14307012 - 14307088
Alignment:
Q  454 ttacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatgattgacgagcctttgagtgacc 530  Q
    |||||||||||||||| ||||||||||||||  | ||| || ||||| | ||||||  |||||||||| ||||||||    
T  14307012 ttacgttcattccaaatcaaccaaacacaaataagccatattagttgtaaaaatgaccgacgagccttcgagtgacc 14307088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 20857428 - 20857490
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    ||||||||||||| | ||||||||||| |   |||||  |||||||||||||||||||||||||||    
T  20857428 aagacataaaaatgggatatattaacagc---agtgaaacacctaagtacaagatgtactaaaagt 20857490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 400
Target Start/End: Complemental strand, 34294336 - 34294232
Alignment:
Q  296 gtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaa 395  Q
    |||||||||||| ||||||||| | ||||| |||||||||| | ||||| || | || |||   ||| || ||||| || |||||||| |||||||||||    
T  34294336 gtcagtcgatacccaaacataagatagggttcgaccaccatatctgagtgccatgcacaaacaaggcattattagcctttaaccaccacaaagagtgaaa 34294237  T
Q  396 tctta 400  Q
     ||||    
T  34294236 cctta 34294232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 6e-60; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 309 - 530
Target Start/End: Original strand, 26855308 - 26855529
Alignment:
Q  309 caaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttactttatcg 408  Q
    |||||| |||||||||||||||||||||| ||| ||||| ||||| ||||| || |||||||||| || |||||||||||| |||||||  ||||||||     
T  26855308 caaacaaaataaagggtccgaccaccatcgttgggtaccatacatgaaatttgcgttgttagcttgaagccaccataaagaatgaaatcgaactttatct 26855407  T
Q  409 gctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatg 508  Q
    ||||| |  ||||| ||||||||||| |||||| | |  |||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||    
T  26855408 gctagattgtcaactgtggtttggatattattaaaaagcctattattacgttcgttccaaaccacccaaacacaaagtaaccaaataagttgaagaaatg 26855507  T
Q  509 attgacgagcctttgagtgacc 530  Q
    | ||||||||||||||||||||    
T  26855508 actgacgagcctttgagtgacc 26855529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 311 - 530
Target Start/End: Original strand, 35213230 - 35213449
Alignment:
Q  311 aacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttactttatcggc 410  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||| || ||||| || |||||||| ||||||||| || | ||||| ||  |    
T  35213230 aacataataaagcgtccgaccaccatctttgtgtaccgtacataaaattggccttattagcctttaaccaccacaaagagtgatatttaactttttctac 35213329  T
Q  411 tagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatgat 510  Q
    ||| ||||| | ||| |||||||| ||| |||| | | |||||||||||||||||||||||||||||||||| ||||||||||||||||| || || |||    
T  35213330 tagctgttccatggttgtttggatattagtataaagtatattattacgttcattccaaaccaaccaaacacagagtaaccaaataagttgtaggaaggat 35213429  T
Q  511 tgacgagcctttgagtgacc 530  Q
    |||||||||  |||||||||    
T  35213430 tgacgagcccgtgagtgacc 35213449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 295 - 491
Target Start/End: Complemental strand, 38489037 - 38488841
Alignment:
Q  295 ggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaa 394  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||| ||||  || ||||| || |||||||| |||||||||     
T  38489037 ggtcagtcgatactcaaacataataaagggtctgaccaccatctttgtgtaccgtacataaagttggtcttattagcctttaaccaccacaaagagtgat 38488938  T
Q  395 atcttactttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaacca 491  Q
    || | ||||| ||  |||| ||||| | ||| |||||||| |||||||| | |||||||||||||||||||||||||| ||||||||||||||||||    
T  38488937 atttaactttttctactagctgttccatggttgtttggatattattataaagtctattattacgttcattccaaaccagccaaacacaaagtaacca 38488841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 27724662 - 27724572
Alignment:
Q  296 gtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataa 386  Q
    |||||||||||| |||||| | |||||| ||||||||||||||||||| |||||||||||||||||  ||  ||||||| |||||||||||    
T  27724662 gtcagtcgatacccaaacaaagtaaaggatccgaccaccatctttgagaaccgtacataaaattggtgttactagcttttaaccaccataa 27724572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 4106945 - 4106880
Alignment:
Q  309 caaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagcttt 374  Q
    |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| ||||    
T  4106945 caaacataataaagggtccgaccaccatctttaaataccatacataaaattggctttgttaacttt 4106880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 35213102 - 35213167
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    ||||||||||||| | ||||||||||||||| |||||  |||||||||||||||||||||||||||    
T  35213102 aagacataaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtactaaaagt 35213167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 36031676 - 36031726
Alignment:
Q  309 caaacataataaagggtccgaccaccatctttgagtaccgtacataaaatt 359  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  36031676 caaacataataaagggtccgaccaccatctttatgtaccgtacataaaatt 36031726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 26855183 - 26855247
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    ||||||||||||| ||||||||||||| ||| |||||  |||||||||||||||||||||||||||    
T  26855183 aagacataaaaatggaatatattaacagcggcagtgaa-cacctaagtacaagatgtactaaaagt 26855247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 4107072 - 4107009
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaa 218  Q
    ||||||||||||| ||||||||||||||||| |||||  || ||||||| ||||||||||||||    
T  4107072 aagacataaaaattgaatatattaacaacggcagtgaaacatctaagtataagatgtactaaaa 4107009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 36031554 - 36031615
Alignment:
Q  158 acataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    |||||||||| ||||||||||||||||| |||||  ||||||||||||||||||| |||||||    
T  36031554 acataaaaat-gaatatattaacaacggcagtgaaacacctaagtacaagatgtattaaaagt 36031615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 30802337 - 30802254
Alignment:
Q  291 caaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagcttt 374  Q
    ||||||| ||||||||| |||||| |  |||||||||||||||| ||| |||| |||||||| |||  |||| || ||||||||    
T  30802337 caaaggttagtcgatacccaaacaaatcaaagggtccgaccaccgtctctgagaaccgtacacaaacgtggcgttattagcttt 30802254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 503
Target Start/End: Original strand, 34103057 - 34103268
Alignment:
Q  292 aaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagt 391  Q
    |||||||||||||||| |||| | | |||| |||||||||||||||| || |  ||| ||| ||||||||| || || ||||||| ||| || || || |    
T  34103057 aaaggtcagtcgatacccaaataaagtaaatggtccgaccaccatctctgcgacccgcacacaaaattggcattattggctttaagccatcaaaacgaat 34103156  T
Q  392 gaaatcttactttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaacca 491  Q
    ||||| | || || ||   |||||  |  | |||||||||||| |||||| | |   | |||||| ||||||||||||| | ||| |||| |||||||||    
T  34103157 gaaatttaacattctctaatagttagtatatggtggtttggatattattaaataccatgttattatgttcattccaaacaacccagacactaagtaacca 34103256  T
Q  492 aataagttggag 503  Q
    ||| || |||||    
T  34103257 aatgagctggag 34103268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 396
Target Start/End: Complemental strand, 44846338 - 44846235
Alignment:
Q  293 aaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtg 392  Q
    |||||||||| | || |||||| ||||| |||||| |||| ||||| |||| ||||| || |||  |||  || ||||||||||| ||||||||||| ||    
T  44846338 aaggtcagtcaagacccaaacacaataaggggtccaaccatcatctctgagaaccgtgcacaaatgtggtattattagctttaaatcaccataaagaatg 44846239  T
Q  393 aaat 396  Q
    ||||    
T  44846238 aaat 44846235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 509
Target Start/End: Complemental strand, 27724507 - 27724449
Alignment:
Q  451 ttattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatga 509  Q
    ||||||||||||||||||| ||||||||| ||||||| ||| || ||||| | ||||||    
T  27724507 ttattacgttcattccaaatcaaccaaacgcaaagtagccatattagttgtaaaaatga 27724449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 33822081 - 33822023
Alignment:
Q  295 ggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacat 353  Q
    ||||||||||||| |||||| |  |||||||||||| ||||||| |||| |||||||||    
T  33822081 ggtcagtcgatacccaaacaaatcaaagggtccgactaccatctatgagaaccgtacat 33822023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 357
Target Start/End: Complemental strand, 39474580 - 39474518
Alignment:
Q  295 ggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaa 357  Q
    |||||||| |||| ||| ||||| |||||||||||||||||||| |||| ||| || ||||||    
T  39474580 ggtcagtcaatacccaagcataacaaagggtccgaccaccatctctgagaaccatatataaaa 39474518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 2686415 - 2686350
Alignment:
Q  282 aaacagaagcaaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtacc 347  Q
    ||||| ||||| |||||||||||||| || |||   ||| |||||||||| |||||||||||||||    
T  2686415 aaacaaaagcataggtcagtcgatacccagacactgtaacgggtccgaccgccatctttgagtacc 2686350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 500
Target Start/End: Original strand, 28327093 - 28327142
Alignment:
Q  451 ttattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttg 500  Q
    |||||||||||||||||||| | |||| ||||||| | ||||||||||||    
T  28327093 ttattacgttcattccaaacaacccaagcacaaagaagccaaataagttg 28327142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 38489149 - 38489084
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    ||||||||||||| | ||||| ||||||||| |||||  ||||| | ||||||||||| |||||||    
T  38489149 aagacataaaaatggtatataataacaacggcagtgaaacaccttaatacaagatgtattaaaagt 38489084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 8e-53; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 309 - 530
Target Start/End: Complemental strand, 14687552 - 14687332
Alignment:
Q  309 caaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttactttatcg 408  Q
    |||||| |||||||||||||||||| ||| ||| ||||| ||||| |||||||| || ||||||| || |||||||||||| |||||||  ||||||||     
T  14687552 caaacaaaataaagggtccgaccactatcgttgggtacc-tacatgaaattggcgttattagcttgaagccaccataaagaatgaaatcgaactttatct 14687454  T
Q  409 gctagttgttcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatg 508  Q
    ||||| |  ||||| ||||||||||| |||||| | |  |||||||||||||| |||||||||| | ||||||||||||||||||||||||| |||||||    
T  14687453 gctagattgtcaactgtggtttggatattattaaaaagcctattattacgttcgttccaaaccaccaaaacacaaagtaaccaaataagttgaagaaatg 14687354  T
Q  509 attgacgagcctttgagtgacc 530  Q
    | ||||||||||||||||||||    
T  14687353 actgacgagcctttgagtgacc 14687332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 303 - 463
Target Start/End: Complemental strand, 14320672 - 14320512
Alignment:
Q  303 gatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttact 402  Q
    ||||| |||||||||||||||||||||||||| |||||| | |||||||||||| ||||| || ||||| || | |||||| ||||||||| || | |||    
T  14320672 gatacccaaacataataaagggtccgaccaccgtctttgtgaaccgtacataaagttggccttcttagcctttagccaccacaaagagtgatatttaact 14320573  T
Q  403 ttatcggctagttgttcaacggtggtttggatgttattatagaatctattattacgttcat 463  Q
    || ||  |||||||||| | |||||||||||| |||||||||| |||||||||||||||||    
T  14320572 ttttctactagttgttccatggtggtttggatattattatagagtctattattacgttcat 14320512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 427 - 503
Target Start/End: Complemental strand, 2710141 - 2710065
Alignment:
Q  427 gtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggag 503  Q
    |||||||||||  || | ||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  2710141 gtttggatgttcctaaataatctgttattacgttcattccaaaccacccaaacacaaagtaaccaaataagctggag 2710065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 14320792 - 14320727
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaaagt 220  Q
    ||||||||||||| | ||||||||||||||| |||||  |||||||||||||||||||||||||||    
T  14320792 aagacataaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtactaaaagt 14320727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 362
Target Start/End: Original strand, 33095552 - 33095619
Alignment:
Q  295 ggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggc 362  Q
    |||||||||||||  | |||||| ||||||||||||||||||||||||| |||||||| |||| ||||    
T  33095552 ggtcagtcgatacctagacataacaaagggtccgaccaccatctttgagaaccgtacacaaaagtggc 33095619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 14687677 - 14687616
Alignment:
Q  155 aagacataaaaatagaatatattaacaacggtagtgagtcacctaagtacaagatgtactaaa 217  Q
    ||||||||||||| ||||||||||||||||| ||||| |  ||||||||||||||||||||||    
T  14687677 aagacataaaaatggaatatattaacaacggcagtgaat-gcctaagtacaagatgtactaaa 14687616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 494
Target Start/End: Original strand, 2364716 - 2364885
Alignment:
Q  325 tccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttactttatcggctagttgttcaacgg 424  Q
    ||||||||||| ||||||| |||||||| |||  |||||||  ||||||| | ||||||||||||||| ||| ||||||| ||   ||    ||||| ||    
T  2364716 tccgaccaccacctttgagaaccgtacacaaatgtggctttactagcttttagccaccataaagagtgtaattttactttttctcataagccttcaatgg 2364815  T
Q  425 tggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaat 494  Q
      |||||| | |||||| | | ||| || || |||||||| ||||||| ||| |||||||||||||||||    
T  2364816 atgtttgggtattattaaaaagtctgttgttgcgttcatttcaaaccatccacacacaaagtaaccaaat 2364885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 494
Target Start/End: Original strand, 22532132 - 22532297
Alignment:
Q  329 accaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaatcttactttatcggctagttgttcaacggtggt 428  Q
    ||||||| ||||||| |||||||| |||  |||||||  ||||||| | ||||||||||||||| ||| ||||||| ||   ||    ||||| ||  ||    
T  22532132 accaccacctttgagaaccgtacacaaatgtggctttactagcttttagccaccataaagagtgtaattttactttttctaataagccttcaatggatgt 22532231  T
Q  429 ttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaaccaaat 494  Q
    |||| | |||||| | | ||| || || |||||||||||||||| ||| |||||||||||||||||    
T  22532232 ttgggtattattaaaaagtctgttgttgcgttcattccaaaccatccacacacaaagtaaccaaat 22532297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 407
Target Start/End: Original strand, 31706348 - 31706464
Alignment:
Q  291 caaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagag 390  Q
    ||||||||||||||||| |||||| | |||| |||||||||||||||| ||||  ||| ||| |||  |||| || |||||||| | ||||||||| ||     
T  31706348 caaaggtcagtcgatactcaaacaaattaaaaggtccgaccaccatctctgagagccgcacacaaacgtggcattattagcttttagccaccataacgaa 31706447  T
Q  391 tgaaatcttactttatc 407  Q
    || ||| | ||||||||    
T  31706448 tggaatttaactttatc 31706464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 372
Target Start/End: Original strand, 6936969 - 6937050
Alignment:
Q  291 caaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagct 372  Q
    ||||||||||||||||| |||||| |  | |||||| |||| |||||| |||| |||||||| |||| |||| || ||||||    
T  6936969 caaaggtcagtcgatacccaaacaaatcatagggtctgaccgccatctctgagaaccgtacacaaaaatggcgttattagct 6937050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 491
Target Start/End: Original strand, 25349927 - 25350000
Alignment:
Q  418 tcaacggtggtttggatgttattatagaatctattattacgttcattccaaaccaaccaaacacaaagtaacca 491  Q
    |||| ||| |||||||| |||||| | | |||||| ||||||| ||||||||| | ||| ||||||||||||||    
T  25349927 tcaatggtagtttggatattattaaatattctattgttacgtttattccaaactacccagacacaaagtaacca 25350000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 21684 - 21784
Alignment:
Q  296 gtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaa 395  Q
    ||||||| | || |||||| ||||| ||||||||||||||||| |||| ||||| || |||  |||| || ||| |||||| |||||||| ||| |||||    
T  21684 gtcagtcaagacccaaacacaataaggggtccgaccaccatctctgagaaccgtgcacaaacgtggcattattaactttaagccaccatatagaatgaaa 21783  T
Q  396 t 396  Q
    |    
T  21784 t 21784  T

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Target: scaffold0321 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 386
Target Start/End: Complemental strand, 17737 - 17642
Alignment:
Q  291 caaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataa 386  Q
    |||| |||||||||||| ||||||    ||||||||||||||||| || ||||||||||||| |||| |  | || ||||| |||| |||||||||    
T  17737 caaaagtcagtcgatacccaaacaatgcaaagggtccgaccaccaactctgagtaccgtacacaaaaataacgttcttagccttaagccaccataa 17642  T

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Target: scaffold0057 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 393
Target Start/End: Complemental strand, 3496 - 3394
Alignment:
Q  291 caaaggtcagtcgatacacaaacataataaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagag 390  Q
    ||||||||||||||||| |||||| |  || ||||||||||||||||| || | ||| || | |||| |||  ||||| ||||| |||||||| || |||    
T  3496 caaaggtcagtcgatacccaaacaaatcaacgggtccgaccaccatctatgtgaaccataaacaaaaatggtgttgtttgctttcaaccaccaaaaggag 3397  T
Q  391 tga 393  Q
    |||    
T  3396 tga 3394  T

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Target: scaffold0048 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 396
Target Start/End: Complemental strand, 50990 - 50912
Alignment:
Q  318 taaagggtccgaccaccatctttgagtaccgtacataaaattggctttgttagctttaaaccaccataaagagtgaaat 396  Q
    |||||| |||||||||||||| |||| ||| |||| |||  |||| ||||| || |||| |||||||||||| ||||||    
T  50990 taaaggatccgaccaccatctctgagaaccttacacaaatgtggccttgtttgccttaagccaccataaagaatgaaat 50912  T

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