View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4104_low_4 (Length: 501)
Name: NF4104_low_4
Description: NF4104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4104_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 488
Target Start/End: Original strand, 41077309 - 41077787
Alignment:
| Q |
18 |
gatctttgatagaaagagcgatgttgagtatgaca--------gcccttatgacttccctacagttctttagggacatcaaatgagtccgagatagattt |
109 |
Q |
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| T |
41077309 |
gatctttgatagaaagagcgatgttgagtatgacattttgagagcccttatgacttccctacagttctttagggacatcaaatgagtccgagatagattt |
41077408 |
T |
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| Q |
110 |
gcatatttgacctcaatgggcttccatatttggcaggctgtgtcgcaggaggagaacccaactctctcgcgctcatttacataggcgatgagaaatgcaa |
209 |
Q |
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| T |
41077409 |
gcatatttgacctcaatgggcttccatatttggcaggctgtgtcgcaggaggagaacccaactctctcgcgctcatttacataggcgatgagaaatgcaa |
41077508 |
T |
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| Q |
210 |
caagaagttgacctgtagcaaaccaaacatcatagtttgtaactttgtattgggggtagaggtgtcaatggcagtaataaacccaggttgtgaagtaacc |
309 |
Q |
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| T |
41077509 |
caagaagttgacctgtagcaaaccaaacatcatagtttgtaactttgtattgggggtagaggtgtcaatggcagtaataaacccaggttgtgaagtaacc |
41077608 |
T |
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| Q |
310 |
tttcaattgatatagccgagacatttcataccggcaaggattgaattggcttgtctttgccaagtatgaaattggaagcggaaagcttgatagctatgtg |
409 |
Q |
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| T |
41077609 |
tttcgattgatatagccgagacatttcataccggcaaggattgaattggcttgtctttgccaagtatgaaattggaagcggaaagcttgatagctatgtg |
41077708 |
T |
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| Q |
410 |
agcactgagcaccatgttgaagtggtgatagtttgaaccggaaggattgccacaattacttggtgtggtggatgtgtct |
488 |
Q |
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| T |
41077709 |
agcactgagcaccatgttgaagtggtgatagtttgaaccggaaggattgccacaattacttggtgtggtggatgtgtct |
41077787 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 50191530 - 50191477
Alignment:
| Q |
73 |
gttctttagggacatcaaatgagtccgagatagatttgcatatttgacctcaat |
126 |
Q |
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|||||| |||||||||| |||||||||| || |||||||||||||| ||||||| |
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| T |
50191530 |
gttcttcagggacatcacatgagtccgatatggatttgcatatttggcctcaat |
50191477 |
T |
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