View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4104_low_5 (Length: 328)
Name: NF4104_low_5
Description: NF4104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4104_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 310
Target Start/End: Original strand, 39553836 - 39554131
Alignment:
| Q |
15 |
cagagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggat |
114 |
Q |
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| T |
39553836 |
cagagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggat |
39553935 |
T |
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| Q |
115 |
caaagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagcc |
214 |
Q |
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| T |
39553936 |
caaagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagcc |
39554035 |
T |
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| Q |
215 |
actactaaaccaccacatttcatccaagttgcctgcatagtaacgatgataattaaaacactataaataatactaataaatttgtagacatgttgc |
310 |
Q |
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| T |
39554036 |
actactaaaccaccacatttcatccaagttgcctgcatagtaacaatgataattaaaacactataaataatactaataaatttgtagacatgttgc |
39554131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 39543817 - 39544078
Alignment:
| Q |
15 |
cagagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggat |
114 |
Q |
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| T |
39543817 |
cagagatggggacatacatgtcataaagtgaaggatgtatggaaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcattgttgggat |
39543916 |
T |
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| Q |
115 |
caaagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagcc |
214 |
Q |
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| T |
39543917 |
caaagacttgttattgttgggtcgagctatctcggcccatgatacaaggaacatgtttgcagaatatgcgtccgctatacgatggtcaaaagtgcaagcc |
39544016 |
T |
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| Q |
215 |
actactaaaccaccacatttcatccaagttgcctgcatagtaacgatgataattaaaacact |
276 |
Q |
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| T |
39544017 |
actactaatccaccacatttcatccatgttgtctgcatagtaacaatgacgattaaaacact |
39544078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 39586948 - 39587182
Alignment:
| Q |
17 |
gagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggatca |
116 |
Q |
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| T |
39586948 |
gagatggggatgtacatgtcatagagtgaaggatggatggaaggtgggtgtcttggggtcagaagggacctttgaaaacaaggttgtgttgttgggatca |
39587047 |
T |
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| Q |
117 |
aagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccac |
216 |
Q |
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| T |
39587048 |
aagacttgttattgctcgatcgggctatctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccac |
39587147 |
T |
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| Q |
217 |
tactaaaccaccacatttcatccaagttgcctgca |
251 |
Q |
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| T |
39587148 |
tactaacccaccacatttcatccaagttgcctgca |
39587182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 254
Target Start/End: Original strand, 17503782 - 17503893
Alignment:
| Q |
143 |
atctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccaccacatttcatccaag |
242 |
Q |
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| T |
17503782 |
atctcggcccatgatactaggaacatgtttgttgaatatgcatctgctatgcgatgatcaaatgtgcatgccactactatcccaccacactttaatgaag |
17503881 |
T |
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| Q |
243 |
ttgcctgcatag |
254 |
Q |
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| T |
17503882 |
ttgcctgcatag |
17503893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 17475654 - 17475735
Alignment:
| Q |
138 |
gagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactac |
219 |
Q |
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| T |
17475654 |
gagccatctcggcccatgatactaagaacatgtttgttgagtaggcatctgctatgcgatgatcaaatgtgcatgccactac |
17475735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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