View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4105_high_15 (Length: 292)

Name: NF4105_high_15
Description: NF4105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4105_high_15
NF4105_high_15
[»] chr3 (3 HSPs)
chr3 (1-274)||(2821593-2821866)
chr3 (47-132)||(48196786-48196871)
chr3 (15-105)||(46574483-46574573)
[»] chr1 (2 HSPs)
chr1 (47-132)||(23539739-23539823)
chr1 (48-177)||(40569674-40569804)
[»] chr5 (1 HSPs)
chr5 (47-132)||(16397967-16398052)
[»] chr8 (1 HSPs)
chr8 (14-92)||(10723775-10723853)
[»] scaffold0018 (1 HSPs)
scaffold0018 (77-174)||(32103-32200)
[»] chr4 (1 HSPs)
chr4 (136-213)||(42286518-42286593)
[»] chr2 (1 HSPs)
chr2 (172-267)||(15999232-15999324)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 2821866 - 2821593
Alignment:
Q  1 ctatacaagacctttgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttgattgtagttt 100  Q
    |||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821866 ctatacaagacctttgttgaagttgtgggattttaaagataagaatgagagaaaataataagaaccttgaatgttattgatactgacttgattgtagttt 2821767  T
Q  101 gataccaaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatatataaactctaatcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821766 gataccaaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatatataaactctaatcc 2821667  T
Q  201 taagagatactcttataaggttataaactaatcacaggaaataacttccgatactctaatacaatattaaagat 274  Q
    |||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  2821666 taagagatgctcttataaggttataaactaattgcaggaaataacttccgatactctaatacaatattaaagat 2821593  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 48196871 - 48196786
Alignment:
Q  47 gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta 132  Q
    ||||||||||||||||||||| |||| ||||| ||| ||||| ||| |||| ||||||| |||| |||||| | ||||||| ||||    
T  48196871 gagagaaaataataagaacctggaatattatttatattgactcgatagtaggttgatacaaaagactaaaccctaatccctgttta 48196786  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 46574573 - 46574483
Alignment:
Q  15 tgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgatac 105  Q
    |||||||||||||  | |||| | |||| ||| |||||  ||||||||||||||||||  ||||||||||||||  || ||| ||||||||    
T  46574573 tgttgaagttgtgagaatttagataaaagaataagagatgataataagaaccttgaatagtattgatactgactgaatagtactttgatac 46574483  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 23539823 - 23539739
Alignment:
Q  47 gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta 132  Q
    ||||||||||||||||| | |||||| ||||||||| ||||||||| |||| ||||| | ||||||||||| | ||||||||||||    
T  23539823 gagagaaaataataagacctttgaatattattgata-tgacttgatagtagcttgatccaaaaggctaaaccctaatccctattta 23539739  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 177
Target Start/End: Complemental strand, 40569804 - 40569674
Alignment:
Q  48 agagaaaataataagaaccttg-aatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaa 146  Q
    |||||||||||||||||||| | |||||||||||||||| ||  || |||| ||||||| |||  || ||  | |||||||||||| || |||| ||  |    
T  40569804 agagaaaataataagaacctcggaatgttattgatactggctgaatagtagcttgatacaaaaaactcaattctaatccctatttatagcgatacacgga 40569705  T
Q  147 ttcaaccttaaatcaagaacaaatcataata 177  Q
     |||| | |||||||||||||||||| ||||    
T  40569704 ctcaatcctaaatcaagaacaaatcaaaata 40569674  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 16397967 - 16398052
Alignment:
Q  47 gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta 132  Q
    ||||||||||||||| |||||||||| || |||||||| | |  || |||| ||||| |||||| ||||| || ||||||||||||    
T  16397967 gagagaaaataataaaaaccttgaatattgttgatactaattgaatagtagcttgatcccaaagactaaatactaatccctattta 16398052  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 10723775 - 10723853
Alignment:
Q  14 ttgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttgat 92  Q
    |||||||| ||||| ||||||| | |||   | ||||||||||||||||||| |||||| ||||||||| | |||||||    
T  10723775 ttgttgaaattgtgcaattttagataaatggacgagagaaaataataagaactttgaatattattgataataacttgat 10723853  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 32200 - 32103
Alignment:
Q  77 ttgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcata 174  Q
    |||||| ||||||||| |||| ||||||| |||  || || || |||||||||||| ||||||| | | | |||| | | ||||||||||||||||||    
T  32200 ttgataatgacttgatagtaggttgatacaaaaaactgaatactaatccctatttatagggatacatagactcaatcatgaatcaagaacaaatcata 32103  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 42286518 - 42286593
Alignment:
Q  136 ggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatatataaactctaatcctaagagatactct 213  Q
    ||||| ||||| |||| |||||||||||| ||||||| |||| ||| | || |||||||| |||||||||||||||||    
T  42286518 ggatacacaaactcaatcttaaatcaagaccaaatcaaaataataaca-at-taaactctgatcctaagagatactct 42286593  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 267
Target Start/End: Original strand, 15999232 - 15999324
Alignment:
Q  172 ataatattaagatatataaactctaatcctaagagatactcttataaggttataaactaatcacaggaaataacttccgatactctaatacaatat 267  Q
    |||||| ||||  ||||||| || |||||||||||||||||   |||| |||||||||||||| | || |||||||  |||||| ||||| |||||    
T  15999232 ataataataagtaatataaaatcaaatcctaagagatactc---taagattataaactaatcatatgacataacttaagatactttaatataatat 15999324  T

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