View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4105_high_8 (Length: 356)
Name: NF4105_high_8
Description: NF4105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4105_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 5 - 343
Target Start/End: Original strand, 55298543 - 55298869
Alignment:
| Q |
5 |
gagcagcacagagaggaacctccaaccaaggttttaacagatagggttcaaaggaacatcttatccgataaaccaagggtcactaagttccccatcaatt |
104 |
Q |
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| T |
55298543 |
gagcagctcagagaggaacctccaaccaaggttttaacagatagggttcaaaggaacatcttatctgataaaccaagggtcactaagttccccatcaatt |
55298642 |
T |
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| Q |
105 |
tccatcctgagaacaatgaaaatgaagaacaaccccctccctccgagcaacaacctgaaactggagaagaagaagatccacttgctgcaccggataccat |
204 |
Q |
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| T |
55298643 |
tccatcctgagaacaatgaaaatgaagaacaaccccctccctccgagcaacaacctgaaactggagaagaagaagatccacttgctgcaccggatacca- |
55298741 |
T |
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| Q |
205 |
tcccccaaatgttcccccaaatgaggggggttcttaacattttgttggtatacaggcttttcaattccccaatgtccatctttacattacctgtatggat |
304 |
Q |
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| T |
55298742 |
-----------ttcccccaaatgaggggggttcttaacattttgttggtatacaggcttttcaattccccaatgtccatctttacattacctgtatggat |
55298830 |
T |
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| Q |
305 |
taattaagatactttttgtgaatctcttatggataaagt |
343 |
Q |
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| T |
55298831 |
taattaagatactttttgtgaatctcttatggataaagt |
55298869 |
T |
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