View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4105_low_10 (Length: 353)
Name: NF4105_low_10
Description: NF4105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4105_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 44 - 342
Target Start/End: Complemental strand, 11225736 - 11225445
Alignment:
| Q |
44 |
cataattttgatgaagcagaatgagcataaccttt-ccttttatatatgttaaacataatgagcagaatgagttttaaaaaaccataactgattgttaaa |
142 |
Q |
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| T |
11225736 |
cataattttgatgaagcagaatgagcataatcttttccttttatatatgttaaacataatgagc-------gtttaaaaaaaccataactgattgttaaa |
11225644 |
T |
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| Q |
143 |
caaaattctacatacaactcatttatttacaatcagtttgtagaatgagcagttaaacaatcaacttacaatcagaaatacatcaagcaatcagttcgca |
242 |
Q |
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| T |
11225643 |
caaaattctacatacaactcatt-atttacaatcagtttgtagaatgagcagttaaacaatcaacttacaatcagaaatacatcaaacaatcagttcgca |
11225545 |
T |
|
| Q |
243 |
taattttgattttacaatcaattctcagaattttgtcaacaatgtgtaacacttgtactacatgcacaacatttaatcaaccaacacacccaaaagtata |
342 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11225544 |
taattttgattttacaatcagttctcagaattttgtcaagaatgcgtaacacttgtactacatgcacaacatttaatcaaccaacacacccaaaagtata |
11225445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 195 - 342
Target Start/End: Complemental strand, 11225401 - 11225254
Alignment:
| Q |
195 |
ttaaacaatcaacttacaatcagaaatacatcaagcaatcagttcgcataattttgattttacaatcaattctcagaattttgtcaacaatgtgtaacac |
294 |
Q |
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||||| ||||| |||||| |||| | |||| || |||||||||| || ||||||||||||||||||| || ||||||||| ||||||||||| ||||| |
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| T |
11225401 |
ttaaataatcagcttacattcaggtacacattaaacaatcagttcacaaaattttgattttacaatcagtttccagaattttatcaacaatgtgcaacac |
11225302 |
T |
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| Q |
295 |
ttgtactacatgcacaacatttaatcaaccaacacacccaaaagtata |
342 |
Q |
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|| || |||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
11225301 |
ttatagtacatgcataacatttaatcaatcaacacacccaaaagtata |
11225254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 195 - 342
Target Start/End: Complemental strand, 11225048 - 11224902
Alignment:
| Q |
195 |
ttaaacaatcaacttacaatcagaaatacatcaagcaatcagttcgcataattttgattttacaatcaattctcagaattttgtcaacaatgtgtaacac |
294 |
Q |
| |
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||||||||||| ||||||||||| | |||| || |||||| || || |||||||||||| ||||| ||| |||||| || ||||||||||||||| | |
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| T |
11225048 |
ttaaacaatcagcttacaatcaggtaaacattaaacaatcaattt-cagaattttgattttgtaatcagttcgcagaatatt-tcaacaatgtgtaactc |
11224951 |
T |
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| Q |
295 |
ttgtactacatgcacaacatttaatcaac-caacacacccaaaagtata |
342 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11224950 |
ttatactacatgcacaacatttaatcaacttaacacacccaaaagtata |
11224902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 11225156 - 11225092
Alignment:
| Q |
278 |
tcaacaatgtgtaacacttgtactacatgcacaacatttaatcaaccaacacacccaaaagtata |
342 |
Q |
| |
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||||||||||||||| ||| ||||||||| ||||||| |||||||||||||| || |||||||| |
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| T |
11225156 |
tcaacaatgtgtaactcttatactacatgaacaacatataatcaaccaacacgccttaaagtata |
11225092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 3072298 - 3072165
Alignment:
| Q |
80 |
cttttatatatgttaaacataatgagcagaatgagttttaaaaaaccataactgattgttaaacaaaattctacatacaactcatttatttacaatcagt |
179 |
Q |
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||||||||||||||||| | |||| ||| |||||| || |||| || |||||| ||||||||||||||||||| | | |||||||||| |||||| | |
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| T |
3072298 |
cttttatatatgttaaaaagaatgggcaaaatgagattaaaaagactataactaattgttaaacaaaattctataaattgttcatttatttgcaatcaat |
3072199 |
T |
|
| Q |
180 |
ttgtagaatgagcagttaaacaatcaacttacaa |
213 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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|
| T |
3072198 |
ttgtagaatgtgcagttaaacaatcaacttacaa |
3072165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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